Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0947 ATGGCTAAGAGCTCGTTCAAGATGGAACACCCTCTCGAGAGGAGACAGGCTGAAGCAGCTCGCATAAGAGAGAAGTATCCTGACAGAATTCCAGTAATCGTTGAAAGGGCAGAGAAGAGTGATGTTCCTGAAATTGATAAGAAAAAGTATCTTGTTCCTGCTGATTTGACTGTTGGGCAGTTTGTGTATGTGGTGAGGAAGAGAATTAAGCTGAGCCCCGAGAAGGCGATCTTCATTTTTGTGAAGAACATCTTACCACCAACTGCGGCAATGATGTCTGCAATATACGAGGAAAACAAGGACGAAGATGGATTCCTATATATGACTTACAGTGGAGAGAACACATTTGGACTTGTGTTCTGA 363 0.4353 MAKSSFKMEHPLERRQAEAARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGLVF* 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0947 120 PANTHER MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED 1 117 IPR004241 -
Vra2g0947 120 CDD Ubl_ATG8 12 114 - -
Vra2g0947 120 Pfam Autophagy protein Atg8 ubiquitin like 14 117 IPR004241 -
Vra2g0947 120 Gene3D - 1 118 - -
Vra2g0947 120 PANTHER AUTOPHAGY-RELATED PROTEIN 1 117 - -
Vra2g0947 120 SUPERFAMILY Ubiquitin-like 3 117 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0947 Vra-Chr2 9548376 9550641 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0947 K08341 - gmx:100301895 231.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0947 2 9548376 9550641 Vra2g0947 2 9548376 9550641 ECH
Vra2g0947 2 9548376 9550641 Vra10g0968 10 15452473 15454087 ECH