Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0968 ATGGCCAAAACCTCTTTCAAGCTTCAACATCCTTTGGAAAGAAGGAAGGCCGAAGCTTCTCGCATTAGGGAGAAATATCCTGATAGAATACCTGTGATTGTGGAGAAAGCTGAAAGAACTGACATTCCTGACATCGATAAAAAGAAATACCTTGTCCCTGCTGATTTGACTGTTGGCCAGTTCGTTTATGTTGTCCGCAAAAGGATTAAGCTCGGTGCAGAGAAGGCTATTTTTGTTTTCATCAACGACACTCTACCTTCAACTGCTGCTCTGATGTCTGCTATTTATGAGGAAAATAAGGATCAAGATGGCTTTCTTTACATGACTTACAGTGGAGAGAACACCTTCGGATCCAACTAG 360 0.4194 MAKTSFKLQHPLERRKAEASRIREKYPDRIPVIVEKAERTDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLGAEKAIFVFINDTLPSTAALMSAIYEENKDQDGFLYMTYSGENTFGSN* 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0968 119 SUPERFAMILY Ubiquitin-like 3 117 IPR029071 -
Vra10g0968 119 MobiDBLite consensus disorder prediction 1 20 - -
Vra10g0968 119 PANTHER MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED 1 117 IPR004241 -
Vra10g0968 119 Pfam Autophagy protein Atg8 ubiquitin like 14 117 IPR004241 -
Vra10g0968 119 PANTHER AUTOPHAGY-RELATED PROTEIN 1 117 - -
Vra10g0968 119 CDD Ubl_ATG8 12 114 - -
Vra10g0968 119 Gene3D - 1 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0968 Vra-Chr10 15452473 15454087 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0968 K08341 - gmx:100784677 226.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0968 10 15452473 15454087 Vra10g0968 10 15452473 15454087 ECH
Vra2g0947 2 9548376 9550641 Vra10g0968 10 15452473 15454087 ECH