Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0839 ATGGCAATTGGCAAANCCATGACAAAGCTATACAACTCTTCAATGGAGTTTGGAAGTGTTGACAACTTTCTAGAGGGCAAAACCATTTTAGTTACGGGTGCAACGGGATTCCTAGCAAAACTTTTGGTGGAGAAGATATTAAGGGTTCAGCCAAACATAAAAGAGTTATACCTTCTTCTGAGAGCAGGAAATTCAGAAGAAGCTACACAACGGCTGCAGGATGAGGTTCTGTCGAAGGATTTGTTCAGGGTGCTACGAGGAATATGGGGTGCAGATTTTGTCTCCTTCGTATCCGAGAAGGTGTTGGCTGTTGGTTGCGATGTTTCTGTTGAGAACTTGGGAATTAAAGACACAAAGCTGAGGGAAAAGTTGTTGGAAGAGACAGACATCATAATAAATTCTGCTGCTACTACCAAGTTTTATGAGAGATTGGATGTTGCAATGGGGATTAATACGATGGGTGCTCTTAATGTTCTGAACTTTGCCAAGAACTGTAGTAAATTACAAATGCTTCTTCATGTATCGACAGATATGCAGATACCTGCAGACATGGTGATAAACTCCATGATAGTAGCACTGGAGGCTTGTTCAAAGAGTTCTTCAAAGACATTGATTTATCATATTGGTTCTTCACTGAGAAATCCATTCAGAATTTCTGATCTTGAGGACTTGGCCCATCAATACTTTACAAAACATCCTTTGACAGACATGTATGGAAAACCAGTGGCTGTTCCCAAGAAAATTACGTGGATGTCTAGTGTGAGTTCATTTGACAGATACATCAACATTCGGTACATGCTAGCTCTCAAGGGATTGAACGTGATGAACAAAATGTGCTGCTACAGTCACGAGGCATTTCACAATGAAAGTAAACAGAAAGTGAAAAAGATGATGGGAATAATGAGACTTTATAAACCTTATGTCCTCTTTGATGGAATCTTCGATGACAAGAACGCAGAAAATTTAAGGATGACAAAAATGAAGGGAAAAGATGACGATGATGTTGGAAGATTTAACTTTGATCCCACAACCATTGATTGGACTCCTTATATGTTAAACACTCACATTCCTGGACTTGTGAAGTATGGTGTCAAGTAA 1098 0.3944 MAIGKXMTKLYNSSMEFGSVDNFLEGKTILVTGATGFLAKLLVEKILRVQPNIKELYLLLRAGNSEEATQRLQDEVLSKDLFRVLRGIWGADFVSFVSEKVLAVGCDVSVENLGIKDTKLREKLLEETDIIINSAATTKFYERLDVAMGINTMGALNVLNFAKNCSKLQMLLHVSTDMQIPADMVINSMIVALEACSKSSSKTLIYHIGSSLRNPFRISDLEDLAHQYFTKHPLTDMYGKPVAVPKKITWMSSVSSFDRYINIRYMLALKGLNVMNKMCCYSHEAFHNESKQKVKKMMGIMRLYKPYVLFDGIFDDKNAENLRMTKMKGKDDDDVGRFNFDPTTIDWTPYMLNTHIPGLVKYGVK* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0839 365 PANTHER MALE STERILITY PROTEIN 2-RELATED 20 177 IPR026055 GO:0080019
Vra2g0839 365 PANTHER MALE STERILITY PROTEIN 2-RELATED 180 365 IPR026055 GO:0080019
Vra2g0839 365 Pfam Male sterility protein 265 365 IPR033640 -
Vra2g0839 365 CDD FAR_C 295 362 IPR033640 -
Vra2g0839 365 Pfam Male sterility protein 31 178 IPR013120 -
Vra2g0839 365 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 26 178 IPR036291 -
Vra2g0839 365 PANTHER FATTY ACYL-COA REDUCTASE 180 365 - -
Vra2g0839 365 PANTHER FATTY ACYL-COA REDUCTASE 20 177 - -
Vra2g0839 365 Gene3D - 19 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0839 Vra-Chr2 7786848 7791020 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0839 180 314 Acyl Lipid Metabolism Gene Families AT3G44560 31.111 6.29e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0839 K13356 - gmx:100793736 254.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0839 2 7786848 7791020 Vra2g0839 2 7786848 7791020 ECH
Vra4g0413 4 7034888 7038101 Vra2g0839 2 7786848 7791020 PCT