Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0594 ATGGGCAGCCCCTCGAAGAAGAATGAAAGTAAGGGGTTTTTCTCCGCCATGTCTTCCATCTTCACCAACGCTATGCACCGATCAGTCAACGGGCTTCTTGGATATGAAGGTGTGGAAGTCATTAATCCAGATGGAGGTAAAGAAGATGCAGAGGAGGAAGCAGAGAGAGGAAGATGGAAACAAGAGGAAAGAGATGGTTACTGGAAGATGATGCAGAAATATATTGGGTCGGATGTAACATCAATGGTGACACTACCAGTTATTATCTTTGAACCGATGACTATGCTTCAGAAAATGGCCGAGTTGATGGAGTACTCCTACTTGTTAGATCAGGCAGATGAATCAGAGGATCCATACATGCGGTTAGTTTACGCAACATCATGGGCTATATCGGTGTACTTTGCTTACCAACGAACCTGGAAGCCTTTTAATCCTATCCTTGGAGAGACTTATGAAATGACTAATCATGGCGGAATTACATTTCTTGCAGAACAGGTCAGTCATCATCCCCCAATGAGTGCTGGGCATGCTGAGAATGAGCATTTTACATATGATGTGACTTCAAAGTTGAAAACTAAGTTTTTGGGAAATTCTGTTGACGTTTACCCTGTTGGAAGAACGCGTGTGACTCTTAAGAGAGATGGTGTAATCTTGGATCTGGTGCCACCTCCTACAAAGGTTAACAACCTCATATTTGGCCGTACCTGGATTGATTCGCCTGGGGAAATGATAATGACTAATCTGACAACTGGAGACAAAGCTGTACTATATTTTCAACCATGTGGATGGTTTGGTGCCGGTCGATACGAAGTGGATGGATATATCTATAATTCTTCCGAGGAGCCTAAAATATTAATGACTGGGAAGTGGAACGAGTCAATGAGTTATCAACAGTGTGATTCAGAAGGAGAGCCTCTCCCAAACACAGAATTGAAAGAGGTTTGGCATGTTGCTGATGTTCCAAAGAATGACAAATTTCAGTATACATATTTTGCTCATAAAATAAACAGCTTTGACACTGCCCCTAGAAAGTTGTTGGCATCAGACTCTCGTCTACGCCCAGATAGATATGCACTTGAGATGGGTGATCTGTCAAAATCTGGGGCAGAAAAGAGCAGTTTGGAGGAGAGGCAGCGAGCTGAAAAGAGAACCCGAGAAGAAAAAGGCCATAAGTTCGTGCCTAGATGGTTTGATTTAACTGAAGAAGTGACACCAACTCCTTGGGGTGATTTGGAAATCTATCAATATAATGGTAAATACATTGAACATCGGGCTGCTGCAGATAACTTGGGAAGCATCGATGATGGTGATGTTAAATCAATTGAATTCAATCCATGGCAGTATGGTAATTTGGCCACGGAATGA 1365 0.4256 MGSPSKKNESKGFFSAMSSIFTNAMHRSVNGLLGYEGVEVINPDGGKEDAEEEAERGRWKQEERDGYWKMMQKYIGSDVTSMVTLPVIIFEPMTMLQKMAELMEYSYLLDQADESEDPYMRLVYATSWAISVYFAYQRTWKPFNPILGETYEMTNHGGITFLAEQVSHHPPMSAGHAENEHFTYDVTSKLKTKFLGNSVDVYPVGRTRVTLKRDGVILDLVPPPTKVNNLIFGRTWIDSPGEMIMTNLTTGDKAVLYFQPCGWFGAGRYEVDGYIYNSSEEPKILMTGKWNESMSYQQCDSEGEPLPNTELKEVWHVADVPKNDKFQYTYFAHKINSFDTAPRKLLASDSRLRPDRYALEMGDLSKSGAEKSSLEERQRAEKRTREEKGHKFVPRWFDLTEEVTPTPWGDLEIYQYNGKYIEHRAAADNLGSIDDGDVKSIEFNPWQYGNLATE* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0594 454 Pfam Oxysterol-binding protein 67 424 IPR000648 GO:0008289
Vra2g0594 454 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 1 451 IPR000648 GO:0008289
Vra2g0594 454 Gene3D - 148 325 - -
Vra2g0594 454 SUPERFAMILY Oxysterol-binding protein-like 61 427 IPR037239 -
Vra2g0594 454 MobiDBLite consensus disorder prediction 364 386 - -
Vra2g0594 454 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED PROTEIN 3C-LIKE ISOFORM X1 1 451 - -
Vra2g0594 454 MobiDBLite consensus disorder prediction 369 386 - -
Vra2g0594 454 ProSitePatterns Oxysterol-binding protein family signature. 164 175 IPR018494 -
Vra2g0594 454 Gene3D - 356 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0594 Vra-Chr2 4684129 4689850 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0594 - - gmx:100810228 879.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0594 2 4684129 4689850 Vra2g0594 2 4684129 4689850 ECH
Vra4g0227 4 4976170 4981545 Vra2g0594 2 4684129 4689850 PCT