Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0526 ATGCCTGGAATCTGGTTCACGCCGCTAACGCTGCTGTTACTACTCGCATTTTCCCCCGCAGTTCGCTCGTGTTCGCCGTCGGACCTGGCCGCGCTGCTACACTTCAAATCCGCTCTCAATGAATCTCGCAACGGAATATTCAACTCCTGGACCGGCACCGACTGCTGCGGCAACTGGCTCGGCGTCTCCTGCGACCGCGACTCTCGCCGCGTCGCCGAAATCAGCCTCCGCGCCGGTCCAGTCTACACCACGTTCGAGAAGCCTTACCGTCCGGATTACATGTCCGGTTACATATCGCCGGAGATTTGCAAGCTCACTCATCTCTCCACTCTCATCATCAGTGACTGGCAGGGAATCTCCGGCGAGATCCCGCGCTGCATCTCCTCGCTCTCCTTCCTCCGCATCATAGACCTCACCGGAAACCGCATTTCTGGCACTCTCCCAGCCGACATCGGGAAGCTTCGGTATCTGAGCCTCCTGAGTGCCGCCGATAACCTCATCACCGGCGAAATCCCGGCGACATTGACGAGCTTGACCGGTTTGACGCATCTGGACCTTCGTAACAACAAGATCTCCGGGCCCATTCCGCAGAACATGGGCCAGCTTCAGATGTTGAGTCGGGTCTTTTTAAGCGGAAACCAAATAACCGGGCCAATCCCGGGCTCAGTCTGTCATATATACCGTCTGGTGGATCTTGATCTGTCAAATAACCATTTATCCGGGCCGATTCCTGAAAGTTTGGGCCGGATGGCGGTTCTGTCAACGTTGAAGTTGGATAATAACAGGCTTTCGGGAAGCATACCAGGGAGGCTGTTGGGGTCGGGTATTAACGAGCTGAACTTGAGCCACAACAAGTTAGAGGGTATTATACCCGACGCCTTTGGGTCTTCATGCTATTTCACGTCACTGGACTTGTCGTATAATAACCTGAAAGGTCCAATACCGAAATCCATGTCTTCTGCTTCGTACATTGGGTACGTGGACTTTAGCCACAACCACCTCTGCGGCCCAATTCCTAACTCCTACAGTAACACCGATGCCTCCTCCTTCGCTTACAACGATTGCCTCTGTGGAAAGCCACTCAAAGCTTGTTAA 1095 0.5397 MPGIWFTPLTLLLLLAFSPAVRSCSPSDLAALLHFKSALNESRNGIFNSWTGTDCCGNWLGVSCDRDSRRVAEISLRAGPVYTTFEKPYRPDYMSGYISPEICKLTHLSTLIISDWQGISGEIPRCISSLSFLRIIDLTGNRISGTLPADIGKLRYLSLLSAADNLITGEIPATLTSLTGLTHLDLRNNKISGPIPQNMGQLQMLSRVFLSGNQITGPIPGSVCHIYRLVDLDLSNNHLSGPIPESLGRMAVLSTLKLDNNRLSGSIPGRLLGSGINELNLSHNKLEGIIPDAFGSSCYFTSLDLSYNNLKGPIPKSMSSASYIGYVDFSHNHLCGPIPNSYSNTDASSFAYNDCLCGKPLKAC* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0526 364 Gene3D Ribonuclease Inhibitor 21 88 IPR032675 -
Vra2g0526 364 PANTHER DNA DAMAGE-REPAIR/TOLERATION PROTEIN DRT100 7 364 - -
Vra2g0526 364 SUPERFAMILY L domain-like 23 343 - -
Vra2g0526 364 SMART LRR_typ_2 130 154 IPR003591 -
Vra2g0526 364 SMART LRR_typ_2 250 274 IPR003591 -
Vra2g0526 364 SMART LRR_typ_2 178 202 IPR003591 -
Vra2g0526 364 SMART LRR_typ_2 278 296 IPR003591 -
Vra2g0526 364 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Vra2g0526 364 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 7 364 - -
Vra2g0526 364 Pfam Leucine Rich repeat 297 311 IPR001611 GO:0005515
Vra2g0526 364 Pfam Leucine Rich repeat 181 193 IPR001611 GO:0005515
Vra2g0526 364 Pfam Leucine Rich Repeat 278 295 IPR001611 GO:0005515
Vra2g0526 364 Gene3D Ribonuclease Inhibitor 92 364 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0526 Vra-Chr2 4128858 4130149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0526 94 364 Receptor kinase-like Gene Family AT5G46330 35.314 4.08e-44 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0526 - - pvu:PHAVU_011G057600g 626.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0526 2 4128858 4130149 Vra2g0526 2 4128858 4130149 ECH
Vra4g0184 4 4624422 4625887 Vra2g0526 2 4128858 4130149 ECH
Vra4g0184 4 4624422 4625887 Vra2g0526 2 4128858 4130149 PCT