Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0390 ATGTCTGACATTGTAGCTGTGCCCTCCATAACTATCACAGATCGACCTGCTAAAGGTGCTGAGATGGAATACTCAGAGGATGATAAGAAAAAAAAGCTTGGCTCTTTCAAGAAGGTAGCAATCAGTGCATCTTCAAAGTTCAAGCATTCCTTGCAAAAGAAGGGGAGAAGGCATAGCAGAGTTATGTCTATTGCTATTGAGGATGAAGTTGATGCAGAAGAGTTGCAATCAGTTGATGCTTTTCGCCAAACACTCATCTTAGAAGAACTATTACCCTCAAAGCATGATGATCATCATATGATGTTAAGATTCTTGAGAGCAAGAAAATATGAAATCGAGAAAACAAAACAAATGTGGGCAGATATGCTTCAGTGGAGGAGGGAGTTTGGTGCTGACACAATTCTGGAGGATTTTGAATTCAAGGAGTTAGAAGAAGTCCTAAAATACTACCCACAAGGGCATCATGGAGTTGATAAGCAAGGGCAACCTGTTTACATAGAAAGGTTGGGTCAGGTTGACTCTAACAAGCTGTTGCAAGTCACAACTTTGGATCGCTATCTTAAGTACCATGTGAGAGAGTTTGAGAGGACATTCGCTGTTAAGTTCCCTGCTTGTTCCATTGCAGCCAAGAAACACATTGACCAAAGCACAACAATCTTGGATGTGCAAGGAGTGGGTCTAAAAAGTTTGAACAAAGCTGCAAGGGATCTCATCCAACGTCTTCAGAAGATTGATGGTGACAACTACCCTGAGACCTTAAACCGTATGTTCATCATTAATGCTGGTTCAGGATTTAGGCTGTTGTGGAACACTGTCAAGTCATTCCTTGATCCTAAGACCACCGCCAAAATCCATGTCCTAGGTAACAAATATCAGAGCAAGTTACTTGAAATCATTGATGCCAGTGAACTTCCAGAGTTCTTGGGTGGTACTTGTACCTGTGAAGACAAAGGTGGTTGCTTGCTTTCAGACAAGGGACCATGGAATGACCCAGAAATCTTCAAGATGGTTCAAAATGGAGCAGGAAAATGCAAGAGGAAAGCTTTATCCGGGATCGAAGTGAAAACCATAATTGAAGATGATACAGAATGCCAAAAGGAATGCGATTCTTTTAAAGAATCTGCAGCCGTGGAGGATCCCTGTGCTGCTCCAGAAGTGGCATTTGCCCCAGTGAATTCATCTTGGGAGAAAGCAGAACGAAAAGATCAGTTAGCCCTTTCTAAAGATTGTTTGTCTAGCAACAGTAATTCTAATAAGTTTAGAGTCCCATTTACTGGTGGAATCATGTCAGTTCTTATGGCAGTGATAACAGTTATCCGCCTGGCAAAGAAAGTGCCAAAAAAAATCACTGGAACTGACTTGTTTGGTAACACAGCACATTGTAATGGCAACAAAATGAAAGCACCTGCAATTTGCATGGATGATCAAATGTCCATGATGAAGCGCATGGTTGAACTAGAAGAGAAGGTGAATATCCTCTCTAAGAAACCTGACATACCAGCTGAGATGGAAGAATTGCTGAATAAGGCTCTTAGCAGAATCAGTACGCTGGAACAAGAATTGGTAATTACCAAAAAGTCACTTGACGATGCCCTTATCCGACAAGTGGAGCTTCAAGGTCAAATTGATAAAAAGAAAAAGAAGAGAATGTGCTTTCCCTCCTTACACAAGATTTCGGGTTCGTGA 1686 0.4146 MSDIVAVPSITITDRPAKGAEMEYSEDDKKKKLGSFKKVAISASSKFKHSLQKKGRRHSRVMSIAIEDEVDAEELQSVDAFRQTLILEELLPSKHDDHHMMLRFLRARKYEIEKTKQMWADMLQWRREFGADTILEDFEFKELEEVLKYYPQGHHGVDKQGQPVYIERLGQVDSNKLLQVTTLDRYLKYHVREFERTFAVKFPACSIAAKKHIDQSTTILDVQGVGLKSLNKAARDLIQRLQKIDGDNYPETLNRMFIINAGSGFRLLWNTVKSFLDPKTTAKIHVLGNKYQSKLLEIIDASELPEFLGGTCTCEDKGGCLLSDKGPWNDPEIFKMVQNGAGKCKRKALSGIEVKTIIEDDTECQKECDSFKESAAVEDPCAAPEVAFAPVNSSWEKAERKDQLALSKDCLSSNSNSNKFRVPFTGGIMSVLMAVITVIRLAKKVPKKITGTDLFGNTAHCNGNKMKAPAICMDDQMSMMKRMVELEEKVNILSKKPDIPAEMEELLNKALSRISTLEQELVITKKSLDDALIRQVELQGQIDKKKKKRMCFPSLHKISGS* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0390 561 Gene3D - 130 341 IPR036865 -
Vra2g0390 561 CDD SEC14 143 311 IPR001251 -
Vra2g0390 561 SMART sec14_4 142 313 IPR001251 -
Vra2g0390 561 PANTHER SEC14P-LIKE PHOSPHATIDYLINOSITOL TRANSFER FAMILY PROTEIN 9 550 - -
Vra2g0390 561 Gene3D - 59 129 - -
Vra2g0390 561 Coils Coil 227 247 - -
Vra2g0390 561 SUPERFAMILY CRAL/TRIO domain 142 338 IPR036865 -
Vra2g0390 561 Pfam CRAL/TRIO, N-terminal domain 94 121 IPR011074 -
Vra2g0390 561 Pfam CRAL/TRIO domain 148 310 IPR001251 -
Vra2g0390 561 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 142 316 IPR001251 -
Vra2g0390 561 PRINTS Cellular retinaldehyde-binding protein signature 100 122 - -
Vra2g0390 561 PRINTS Cellular retinaldehyde-binding protein signature 269 288 - -
Vra2g0390 561 PRINTS Cellular retinaldehyde-binding protein signature 302 311 - -
Vra2g0390 561 SUPERFAMILY CRAL/TRIO N-terminal domain 68 138 IPR036273 -
Vra2g0390 561 SMART CRAL_TRIO_N_2 97 122 IPR011074 -
Vra2g0390 561 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 9 550 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0390 Vra-Chr2 3037983 3042392 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0390 103 307 Acyl Lipid Metabolism Gene Families AT5G47730 29.469 7.33e-20 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0390 - - gmx:100792335 847.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0390 2 3037983 3042392 Vra2g0390 2 3037983 3042392 ECH
Vra2g0390 2 3037983 3042392 Vra11g0729 11 5870085 5874324 ECH