Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0729 ATGTCTGGTTCTTTCAAGCAGAAACTGAGGAATTCCTTGACGAAAAAGGGTAGGCGAAGCAGCAAGGTCATGTCCATTGAAATTGAGGATGTCCACGATGCTGAGGAGTTGAAAATAGTTGACGAGTTCCGTCAAGCTCTTATTTTGGACGAACTACTCCCTGCAAAACACGATGATTACCATATGATGCTTAGATTCCTCAAGGCCAGAAAGTTTGATGTTGAGAAAACAAAGGAAATGTGGTCTGAAATGCTCAAATGGAGGAAGGAGTTTGGTGCTGACACTATTCAGGAGGACTTTGATTTCAAAGAAATTGATGAAGTTTTGCAATATTATCCCCAAGGACACCATGGAGTGGACAAAGAGGGAAGGCCTGTATATATCGAGAGACTAGGCCAAGTCGATGCCGGGAAAATGATGCAAGTCACAACCATGGATCGCTATATTAAATACCATGTAAAGGAGTTCGAGAGGACATTTGATGTGAAGTTTGCAGCTTGTTCGATTGCTGCAAAGAAGCACATCGATCAAAGTACAACTATCCTCGATGTGCAGGGAGTGGGGCTTAAAAGCTTCAACAAACATGCTAGGGAACTCGTTACTCGTCTTCAGAAGATTGACGGTGATAACTATCCTGAGACCTTGAACCGCATGTTCATCATCAATGCAGGTTCTGGATTCAGAATACTGTGGAACACCGTAAAATCATTCCTTGACCCTAAGACCACCGCAAAAATCAATGTTCTTGGCAACAAGTTCGACACCAAATTGCTAGAAATAATTGATGCAAGTGAGTTGCCTGAATTTTTGGGAGGTACTTGTAATTGTGAAGGAGGCTGTATGCGCTCTGATAAGGGCCCATGGAAGGATCCAGAAATATTGAAGATGGTTCACAGCGGTGCTCACAAATGCTCAAGAAAGGGTGACTCACACGACGAAGAAAAATCAATCGCTGAGGAACCCGAGACTCCCAAGTTCGAGGCAGCCCCTCAGGTTGCTCCCGTTGCTGAAGTGGTCACTGCTACTATAGAAGTCTCCAAGCCTGTGGAGTTAGCCCCAGCGGCTGTCGAGAAACCTTGCCAACCTAATGACGCAGTTGATCCAACTTCGGCAGCAGCGGCTGCAGCGGCGGCAGCGGCAGCATCAACAGTGTCTATCAAAGGCTCTTCTGCTCAATCGCTTTTGACCAATTTGCCTGCAACGTGCTTGTCTCCTGCAGAGTTTGCGACTGTGATGAAACGCATGGCTGAGTTGGAGGAGAAAATGGTGACCTTGAATAAGCAGCCTGCAGCCATGCCACCCGAGAAGGAGAAAATGCTTAATGCAACTATGACTCGGGCCGATGACTTGGAGCAGCAACTTTTGGCCACCAAGAAGGCTCTGGAGGATTCACTTGTTAAGCAAGAAGAGCTTTCTGCTTACATTGAGAAAAAGAAGAAGAAGAAGAAGAGATTCTACTTCTTTTAA 1467 0.4567 MSGSFKQKLRNSLTKKGRRSSKVMSIEIEDVHDAEELKIVDEFRQALILDELLPAKHDDYHMMLRFLKARKFDVEKTKEMWSEMLKWRKEFGADTIQEDFDFKEIDEVLQYYPQGHHGVDKEGRPVYIERLGQVDAGKMMQVTTMDRYIKYHVKEFERTFDVKFAACSIAAKKHIDQSTTILDVQGVGLKSFNKHARELVTRLQKIDGDNYPETLNRMFIINAGSGFRILWNTVKSFLDPKTTAKINVLGNKFDTKLLEIIDASELPEFLGGTCNCEGGCMRSDKGPWKDPEILKMVHSGAHKCSRKGDSHDEEKSIAEEPETPKFEAAPQVAPVAEVVTATIEVSKPVELAPAAVEKPCQPNDAVDPTSAAAAAAAAAAASTVSIKGSSAQSLLTNLPATCLSPAEFATVMKRMAELEEKMVTLNKQPAAMPPEKEKMLNATMTRADDLEQQLLATKKALEDSLVKQEELSAYIEKKKKKKKRFYFF* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0729 488 Gene3D - 12 91 - -
Vra11g0729 488 MobiDBLite consensus disorder prediction 301 329 - -
Vra11g0729 488 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH10-RELATED 6 365 - -
Vra11g0729 488 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH10-RELATED 393 484 - -
Vra11g0729 488 MobiDBLite consensus disorder prediction 301 322 - -
Vra11g0729 488 Pfam CRAL/TRIO domain 110 272 IPR001251 -
Vra11g0729 488 SMART sec14_4 104 275 IPR001251 -
Vra11g0729 488 Gene3D - 92 301 IPR036865 -
Vra11g0729 488 CDD SEC14 105 273 IPR001251 -
Vra11g0729 488 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 104 278 IPR001251 -
Vra11g0729 488 SUPERFAMILY CRAL/TRIO N-terminal domain 32 100 IPR036273 -
Vra11g0729 488 SMART CRAL_TRIO_N_2 59 84 IPR011074 -
Vra11g0729 488 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 393 484 - -
Vra11g0729 488 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 6 365 - -
Vra11g0729 488 Coils Coil 408 428 - -
Vra11g0729 488 Pfam CRAL/TRIO, N-terminal domain 5 82 IPR011074 -
Vra11g0729 488 PRINTS Cellular retinaldehyde-binding protein signature 62 84 - -
Vra11g0729 488 PRINTS Cellular retinaldehyde-binding protein signature 231 250 - -
Vra11g0729 488 PRINTS Cellular retinaldehyde-binding protein signature 264 273 - -
Vra11g0729 488 SUPERFAMILY CRAL/TRIO domain 104 297 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0729 Vra-Chr11 5870085 5874324 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0729 40 269 Acyl Lipid Metabolism Gene Families AT5G47730 28.870 8.11e-19 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0729 - - gmx:100527533 701.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0729 11 5870085 5874324 Vra11g0729 11 5870085 5874324 ECH
Vra2g0390 2 3037983 3042392 Vra11g0729 11 5870085 5874324 ECH