Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0189 ATGTCATCAAAACCATTCAAAGCAAGCCGGTTATCTCATTCTCAGTCAGCAACTTCTGAGGCATCTGATGGCCCGAAGCCTCCTTTGCCTCCAACCGTAACGTTTGGGCGAAGAACTTCTTCGGGTCGCTACATCAGCTACTCAAGAGATGATCTTGACAGTGAACTTGGGAGTAGTGATTTCATGAATTACACAGTGCATATGCCTCTGACTCCTGATAACCAACCTATGGATCCATCAATTTCACAGAAAGTTGAGGAGCAATATGTGTCAAGCTCCCTTTTCACGGGAGGATTCAACAGTGTTACTCATGCCCACCTAATGGATAAGGTGATAGAATCCGAAGCTAGCCATCCACAGATGGCTGGTGCAAAAGGGTCTTCGTGTGCAGTTCCTGGTTGTGATTGTAAGGTGATGAGCGATGAACGTGGTGTGGATATTCTACCTTGTGAGTGTGACTTTAAGATATGTAGAGACTGCTATATAGATGCTGTAAAAGCAGGAGATGGAATGTGCCCGGGATGCAAAGAGCCTTACAAAAGCACAGAACTAGATGAGGTTGCTGTGGATGAACGAAATGGAAGACCATATCCGCTTCCTCCCTCAAGTGGAGTGTCTAAAATGGAGAGGAGATTGTCCTTGATGAAGTCGACAAAGTCAGCTCTAATGAGAAGCCAGACTGGAGATTTTGATCACAATCGTTGGCTCTATGAAACAAAGGGTACCTATGGCTATGGTAATGCTATTTGGCCAAAGGGAGGAAATTTTGGAAGTGGAAATGGGGATGATGATGTTGTTGAGCCAATGGATCTGATGAACAGACCCTGGAGGCCACTTACCAGGAAACTCAAGATACCTGCCGCTGTTCTCAGCCCATATCGTCTCATCATATTCATTCGGTTGGTTGTCCTGGTACTGTTCTTGGCATGGAGGGTGAAGCACAAAAATACTGATGCAATTTGGCTATGGGGCATGTCTGTGGTTTGTGAGATATGGTTTGCCTTTTCTTGGCTTCTGGATCAACTACCCAAGCTATGCCCAATAAATCGTTCCACAGATCTCAATGTTCTGAAGGAAAAATTTGAAGTGCCAAGTCCCAACAATCCTACTGGAAAATCAGATCTTCCAGGCATAGATGTTTTTGTTTCTACTGCTGATCCTGAGAAAGAACCACCTCTTGTCACTGCAAACACCATCTTATCAATCCTAGCTGCAGACTATCCAGTTGAGAAACTTTCTTGCTATGTTTCTGATGATGGAGGTGCACTCTTGACATTTGAGGCAATGGCTGAAGCTGCCAGCTTTGCTAATGTGTGGGTTCCATTCTGTCGTAAGCACAATATAGAGCCTAGGAATCCTGAATCATATTTCAACTTAAAGAGAGATCCCTACAAAAACAAAGTGAAACCAGATTTTGTCAAGGATCGTAGACGAGTGAAGCGTGAGTATGATGAGTTCAAGGTCAGGATCAATGGTTTGCCCGATTCTATCCGGCGTCGGTCAGATGCCTTTCATGCAAGAGAGGAATTGAGGGCTATGAAACTGCAGAGACAAACTAAGGTAGATGAACCTGTTGAACCGGTAAAGATTCCAAAAGCAACATGGATGGCTGATGGAACTCACTGGCCAGGCACTTGGTTGAATCCTTCATCCGAGCACTCTAAAGGTGATCATGCCGGTATAATCCAGGTGATGTTGAAACCTCCAAGTGATGAACCTCTCCTTGGAAATGCTGACGACCAAAAGCCTATTGACTTGGTTGATGTAGATATCCGTCTCCCCCTTCTTGTTTATGTTTCTAGAGAGAAACGTCCAGGCTATGATCACAACAAAAAAGCTGGGGCCATGAATGCCTTAGTTCGAGCCTCAGCCATCATGTCCAATGGTCCTTTTATACTCAATCTTGATTGCGACCACTACATCTACAACTCCAAGGCAATGAGAGAAGGTATGTGCTTTATGATGGACCGTGGTGGTGATCGCATTTGCTATGTTCAATTCCCACAAAGATTTGAGGGGATTGATCCTTCCGACAGATATGCCAATCATAACACCGTATTTTTTGATGTCAACATGAGAGCACTTGATGGACTTCAAGGTCCAGTCTATGTAGGAACCGGTTGCCTTTTCAGAAGGGTCGCTCTTTACGGTTTTGATCCTCCCCGCTCTAAGGAACATCATTCTGGATGTTGTAGTTGCTGTTTTGGCAAAAGAAAGAAGAATGCTAACGTCTCTGAAGAGAATCGGGCACTGAGGATGGGTGACTCTGAGGATGAAGAAGAAGAAATGAATCTATCACTGTTTCCTAAGAGATTTGGAAACTCAACTTTCCTCATTGACTCAATTCCAGTGGCAGAGTTCCAAGGCAGGCCACTTGCTGATCACCCTGCAGTGAAGAATGGACGCCCTCCTGGCGCCCTCACCATACCACGTGAGCTTCTTGATGCATCAACCGTGGCAGAGGCCATCAGTGTAATCTCTTGCTGGTACGAGGATAAAACCGAATGGGGACAGCGTGTTGGATGGATCTATGGATCAGTTACTGAGGATGTGGTTACTGGCTATAGGATGCACAATAGAGGATGGAAATCAGTTTACTGTGTTACCAAGCGTGATGCATTCCGTGGCACTGCTCCCATAAATCTCACTGACAGACTACATCAAGTCCTTAGATGGGCAACTGGGTCGGTTGAAATATTCTTCTCAAGAAACAATGCATTTCTGGCTAGCCCAAGAATGAAGTTTCTCCAACGGATTGCATACCTTAATGTTGGAATCTATCCATTCACTTCCTTTTTCCTTATTGTCTACTGCTTCCTCCCTGCACTTTCCCTCTTCTCTGGCCAATTCATTGTTCAAACTCTCAACGTCACTTTCCTTGTTTATCTCTTGACCATCACTGTGACTTTGTGCATGCTGGCTGTGCTTGAAATCAAGTGGTCCGGCATTGAGCTGGAAGAGTGGTGGAGAAATGAGCAGTTTTGGTTGATTGGAGGAACAAGTGCACATCTAGCCGCTGTGCTGCAGGGTTTGCTCAAAGTGATAGCAGGAATTGAAATCTCTTTCACCTTGACATCAAAATCTGCTGGGGATGATGTAGATGATGAGTTTGCTGATCTATATATTGTGAAATGGACATCCCTTATGATACCACCAATCACAATTATGATGGTTAACCTGATAGGAATAGCAGTTGGAGTTAGCAGAACCATATACAGTGTGATACCTCAGTGGAGCCGTCTACTTGGTGGTGTTTTTTTCAGTTTTTGGGTCTTGACCCATCTTTACCCTTTTGCAAAAGGATTGATGGGAAGGAGAGGGAAGACACCTACCATTGTTTTTGTATGGTCAGGTCTCATAGCAATCACAATATCACTCCTTTGGGTGGCCATCAATCCCCCTGCTGGTACCAACCAAATCGGTGGTTCATTCCAGTTCCCATGA 3444 0.4477 MSSKPFKASRLSHSQSATSEASDGPKPPLPPTVTFGRRTSSGRYISYSRDDLDSELGSSDFMNYTVHMPLTPDNQPMDPSISQKVEEQYVSSSLFTGGFNSVTHAHLMDKVIESEASHPQMAGAKGSSCAVPGCDCKVMSDERGVDILPCECDFKICRDCYIDAVKAGDGMCPGCKEPYKSTELDEVAVDERNGRPYPLPPSSGVSKMERRLSLMKSTKSALMRSQTGDFDHNRWLYETKGTYGYGNAIWPKGGNFGSGNGDDDVVEPMDLMNRPWRPLTRKLKIPAAVLSPYRLIIFIRLVVLVLFLAWRVKHKNTDAIWLWGMSVVCEIWFAFSWLLDQLPKLCPINRSTDLNVLKEKFEVPSPNNPTGKSDLPGIDVFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFANVWVPFCRKHNIEPRNPESYFNLKRDPYKNKVKPDFVKDRRRVKREYDEFKVRINGLPDSIRRRSDAFHAREELRAMKLQRQTKVDEPVEPVKIPKATWMADGTHWPGTWLNPSSEHSKGDHAGIIQVMLKPPSDEPLLGNADDQKPIDLVDVDIRLPLLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSKAMREGMCFMMDRGGDRICYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLQGPVYVGTGCLFRRVALYGFDPPRSKEHHSGCCSCCFGKRKKNANVSEENRALRMGDSEDEEEEMNLSLFPKRFGNSTFLIDSIPVAEFQGRPLADHPAVKNGRPPGALTIPRELLDASTVAEAISVISCWYEDKTEWGQRVGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNAFLASPRMKFLQRIAYLNVGIYPFTSFFLIVYCFLPALSLFSGQFIVQTLNVTFLVYLLTITVTLCMLAVLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSAGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIGIAVGVSRTIYSVIPQWSRLLGGVFFSFWVLTHLYPFAKGLMGRRGKTPTIVFVWSGLIAITISLLWVAINPPAGTNQIGGSFQFP* 1148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0189 1147 MobiDBLite consensus disorder prediction 1 40 - -
Vra2g0189 1147 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 195 IPR013083 -
Vra2g0189 1147 SUPERFAMILY RING/U-box 118 183 - -
Vra2g0189 1147 Pfam Cellulose synthase 378 1138 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vra2g0189 1147 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 36 1145 - -
Vra2g0189 1147 MobiDBLite consensus disorder prediction 1 22 - -
Vra2g0189 1147 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 586 719 IPR029044 -
Vra2g0189 1147 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN D3 36 1145 - -
Vra2g0189 1147 SUPERFAMILY Nucleotide-diphospho-sugar transferases 393 719 IPR029044 -
Vra2g0189 1147 Pfam RING/Ubox like zinc-binding domain 131 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0189 Vra-Chr2 1420351 1425432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0189 2 1147 Glycosyltransferase AT3G03050 83.958 0.0 2031
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0189 K20924 - gmx:100792604 2159.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0189 2 1420351 1425432 Vra11g0149 11 975446 980422 ECH
Vra2g0189 2 1420351 1425432 Vra2g0189 2 1420351 1425432 ECH