Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0149 ATGGCATCAAAAATGTTTAGAGCAAGCCGATCATCTATATCAACATCGTCTGATGCAGCTGATGGCCAGAAGCCTCCTTTACCTCCAAGTGTACAATTTGGGCGGAGAACTTCCTCAGGTCGCTATGTCAGTTACTCTAGAGATGATCTTGACAGTGAAATAGGGAGCACAGACTTCATGAATTATACAGTGCATATACCAGCCACCCCAGATAACCAACCTATGGATCCATCAATCTCACAGAAAGTTGAGGAGCAATATGTGTCAAATTCACTTTTCACTGGTGGATTCAACAGCGTTACTCGAGCCCATCTAATGGATAAGGTGATAGAATCTGAAGCAAATCATCCACAGATGGCTGGTGCAAAAGGGTCTTCATGTGCAGTTCCTGGTTGTGATTCTAAGGTGATGAGTGATGAACGTGGTGCTGATATTCTTCCCTGTGAGTGTGATTTTAAGATATGTAGAGATTGTTATATAGATGCAGTGAAAACAGGAGGTGGTATTTGCCCAGGATGCAAGGAACCGTATAAGAACACAGAATTAGATGAAGTGGCTGTAGATAATGGACGTCCTCTTCCACTTCCTCCACCTGGTGGAATGTCTAAAATGGAGAAGAGATTGTCCTTGATGAAGTCAACGAAATCAATGTTAATGAGGAGCCAAACTGGAGACTTTGATCATAACCGGTGGCTCTTTGAAACAAAGGGGACCTATGGCTATGGTAATGCTATATGGCCAAAGGAAGGAGGTTTTGGAAATGAAATAGAGGATGATGTTGTTGAGCCAACTGAATTGATGAACAGACCTTGGAGACCACTTACTAGGAAACTGAAGATACCTGCTGCTATTTTGAGTCCATATCGTCTTATCATTTTTATTCGTTTGGTTGTATTGGCACTGTTCTTGGCATGGAGGGTCAAACACCAAAATACTGATGCAGTATGGCTATGGGGCATGTCTGTTGTTTGTGAGATATGGTTTGCTTTTTCCTGGCTTCTGGATCAACTGCCCAAATTATGCCCAGTGAATCGTTCCACAGATCTTAATGTTCTAAAGGAGAAATTTGAAACACCCACCCCTAACAATCCAACTGGAAAATCTGATCTTCCAGGAATAGATATATTTGTTTCTACTGCAGATCCTGAGAAAGAACCTCCTCTCGTAACTGCAAACACTATCCTGTCTATTTTAGCTGCTGATTACCCTGTGGAGAAGCTTTCTTGTTATGTTTCTGATGATGGAGGTGCGCTCCTAACTTTTGAGGCAATGGCTGAAGCTGCTAGCTTTGCTAATACATGGGTTCCCTTCTGCCGTAAACATGATATAGAGCCCAGGAATCCTGAATCATACTTCAACTTAAAAAGAGACCCTTACAAAAACAAAGTGCGGCCTGATTTTGTCAAGGATCGAAGACGAGTAAAGCGTGAGTATGATGAATTTAAGGTTAGGATCAATGGTCTGCCTGAATCTATTCGTCGCCGATCTGATGCCTATCATGCAAGAGAGGAAATCAAGGCCATGAAAGTTCAGAGACAAAATAGGGGAGATGAACCTCAAGAAACGGTAAAGATTCCTAAAGCAACATGGATGGCTGATGGAACACATTGGCCAGGAACTTGGTTGAATCCTACATCTGAGCATTCTAAGGGTGACCATGCTGGTATAATTCAGGTGATGTTGAAGCCTCCTAGCGATGAACCTCTCCCAGGAAATGCAGATGATACAAGTCTCATAGACCTTACTGATGTTGATATCCGTCTTCCCCTTCTTGTTTATGTTTCTCGAGAGAAGCGACCAGGCTATGATCACAACAAGAAAGCTGGCGCCATGAATGCCTTGGTTCGAGCATCGGCAATTATGTCTAATGGTCCATTTATTCTCAATCTTGACTGTGATCACTATATCTACAACTCAAAGGCAATGAGGGAAGGCATGTGCTTTATGATGGATCGTGGCGGCGATCGCCTTTGTTACGTCCAGTTCCCCCAAAGGTTTGAAGGGATTGATCCCTCTGATAGATATGCCAATCACAATACTGTCTTCTTTGATGTCAACATGAGAGCCCTTGATGGACTTCAAGGGCCGGTGTATGTGGGAACAGGGTGCCTTTTCAGACGGATTGCACTGTATGGTTTTGACCCACCTCGTTCCAAAGAGCACCACACAGGTTGTTGTAATTGTTGCTTTGGTCGTCAGAAGAAACATGCATCAATGGCAAGCACCCCAGAAGAGAGTCGGGCATTGAGGATGGGTGATTCTGATGAGGAGGAGATGAATCTATCACTGTTCCCGAAGAAGTTTGGAAACTCAACTTTCCTTATTGACTCTATTCCTGTGGCTGAATTCCAAGGCCGGCCACTGGCCGATCACCCTGCCGTGAAAAACGGACGTCCGCCGGGTGCTCTCACCATCCCCCGCGAACTTCTCGATGCATCGACAGTGGCAGAGGCCATCAGTGTCATCTCCTGTTGGTACGAGGACAAGACCGAGTGGGGAAACCGTGTCGGGTGGATCTATGGCTCTGTGACGGAGGATGTTGTGACTGGGTATAGGATGCACAATAGAGGATGGAAATCAGTTTACTGTGTAACCAAACGTGATGCCTTCCGTGGAACTGCTCCCATCAATCTTACTGACAGATTGCATCAAGTTCTCAGATGGGCTACTGGCTCAGTTGAGATATTCTTCTCAAGAAACAATGCTTTGCTGGCCAGCCCAAGAATGAAAATTCTTCAAAGAATTGCATATCTTAACGTTGGAATCTACCCTTTCACATCCATATTTCTAATTGTCTACTGCTTCCTTCCTGCATTGTCCCTTTTCTCTGGGCAGTTCATTGTGCAGACCCTCAATGTCACTTTTCTTTCATACCTCTTAGGCATCACTGTAACACTCTGCATACTTGCAGTGCTTGAGATTAAGTGGTCAGGCATTGAGCTGGAAGAATGGTGGAGAAATGAGCAGTTCTGGCTGATTGGAGGGACAAGTGCTCATCTTGCTGCTGTGCTTCAAGGTTTGCTGAAAGTGATAGCAGGAATTGAAATCTCATTCACCTTGACTTCAAAGTCAGGTGGCGATGATGTAGATGATGAATTTGCTGATCTGTATATTGTGAAATGGACATCCCTCATGATACCACCTATCACAATTATGATGGTTAACCTGATAGGAATAGCAGTTGGAGTTAGCAGAACCATTTACAGTGTGATACCACAATGGAGCCGTCTACTGGGTGGTGTGTTCTTCAGTTTTTGGGTCTTGGCTCATCTCTATCCCTTTGCAAAAGGTTTGATGGGAAGAAGAGGAAGAACACCTACCATAGTTTTTGTATGGTCAGGCCTCATTTCCATCACAATTTCTCTCCTCTGGGTTGCCATCAACCCTCCTGCTGGTTCTAATCAGATTGGTGGTTCATTCCAGTTTCCTTGA 3432 0.4432 MASKMFRASRSSISTSSDAADGQKPPLPPSVQFGRRTSSGRYVSYSRDDLDSEIGSTDFMNYTVHIPATPDNQPMDPSISQKVEEQYVSNSLFTGGFNSVTRAHLMDKVIESEANHPQMAGAKGSSCAVPGCDSKVMSDERGADILPCECDFKICRDCYIDAVKTGGGICPGCKEPYKNTELDEVAVDNGRPLPLPPPGGMSKMEKRLSLMKSTKSMLMRSQTGDFDHNRWLFETKGTYGYGNAIWPKEGGFGNEIEDDVVEPTELMNRPWRPLTRKLKIPAAILSPYRLIIFIRLVVLALFLAWRVKHQNTDAVWLWGMSVVCEIWFAFSWLLDQLPKLCPVNRSTDLNVLKEKFETPTPNNPTGKSDLPGIDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFANTWVPFCRKHDIEPRNPESYFNLKRDPYKNKVRPDFVKDRRRVKREYDEFKVRINGLPESIRRRSDAYHAREEIKAMKVQRQNRGDEPQETVKIPKATWMADGTHWPGTWLNPTSEHSKGDHAGIIQVMLKPPSDEPLPGNADDTSLIDLTDVDIRLPLLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSKAMREGMCFMMDRGGDRLCYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLQGPVYVGTGCLFRRIALYGFDPPRSKEHHTGCCNCCFGRQKKHASMASTPEESRALRMGDSDEEEMNLSLFPKKFGNSTFLIDSIPVAEFQGRPLADHPAVKNGRPPGALTIPRELLDASTVAEAISVISCWYEDKTEWGNRVGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLASPRMKILQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLSYLLGITVTLCILAVLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSGGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIGIAVGVSRTIYSVIPQWSRLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLISITISLLWVAINPPAGSNQIGGSFQFP* 1144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0149 1143 Pfam RING/Ubox like zinc-binding domain 129 178 - -
Vra11g0149 1143 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 34 1141 - -
Vra11g0149 1143 MobiDBLite consensus disorder prediction 1 21 - -
Vra11g0149 1143 Pfam Cellulose synthase 373 1133 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vra11g0149 1143 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 191 IPR013083 -
Vra11g0149 1143 SUPERFAMILY RING/U-box 112 181 - -
Vra11g0149 1143 MobiDBLite consensus disorder prediction 1 44 - -
Vra11g0149 1143 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 583 714 IPR029044 -
Vra11g0149 1143 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN D3 34 1141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0149 Vra-Chr11 975446 980422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0149 2 1143 Glycosyltransferase AT3G03050 84.421 0.0 2031
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0149 K20924 - gmx:100792604 2265.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0189 2 1420351 1425432 Vra11g0149 11 975446 980422 ECH
Vra11g0149 11 975446 980422 Vra11g0149 11 975446 980422 ECH