Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1919 ATGGGGGCTGCTGTTTCCACAACTGCCACAGAAAATGATGAAGTTCCCACCTTTTCTTTGTCCTCCCCACAGACGACAACCCTTGATGATGTTCCTGAGAATTGCATCTCTTCTCTCATGATGAGTTTTCATCCACAAGAGATTTGCACATTGGCCAGAGTTAACAAGGCCTTCCACAGAGCTTCTTCTGCTGACTTTGTATGGGAATCAAAGTTACCCTCAAACTATAAATTCCTTCTCAACAAACTACTTCCTCAACACAACAATCTTTCTTCCATGTCCAAGAAAGAGATCTATGCCAAACTATGCACACCCAATTTCTTCGATCATGGCACCAAGGAGATTTGGCTTGACAGAAGCAGTGCACAAGTTTGTTTGTTCATTTCTTCAAAAGCCTTCAAGATTACAGGAATAGATGATAGAAGATATTGGAATTATGTTCCGACTGAGGAATCCAGGTTTAAGAGTGTTGCATATCTTCAACAAATGTGGTGGGTTGAAGTAATAGGGGAGCTAGAGTTTGAGTTTCCAAAGGGAAACTATAGTGTATTTTTCAAGCTTCAATTGGGGAAGCCCACAAAGAGATTGGGCCGAAGAGTGTGCTACCTTGATCAAGTTCATGGATGGGACATCAAGCCCGCCAGATTTCAGCTGTCTACATCTGACGGCCAGAGTTCAGTCTCACAGTGCTATCTACGCGGGCCTGGAGAGTGGGCCCACTATCATGTTGGGGACTTTGCAGTTGAGAAGCCCAATGGGCCAACAAATATCAAGTTTTCTTTGGCCCAAATTGATTGCACTCACACCAAAGGTGGGCTTTGCATAGATGGGGTAGTGATTTGCCCAAAGGAGTTTTCAGAAAGGCTGAAACAGTTTTAG 879 0.438 MGAAVSTTATENDEVPTFSLSSPQTTTLDDVPENCISSLMMSFHPQEICTLARVNKAFHRASSADFVWESKLPSNYKFLLNKLLPQHNNLSSMSKKEIYAKLCTPNFFDHGTKEIWLDRSSAQVCLFISSKAFKITGIDDRRYWNYVPTEESRFKSVAYLQQMWWVEVIGELEFEFPKGNYSVFFKLQLGKPTKRLGRRVCYLDQVHGWDIKPARFQLSTSDGQSSVSQCYLRGPGEWAHYHVGDFAVEKPNGPTNIKFSLAQIDCTHTKGGLCIDGVVICPKEFSERLKQF* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1919 292 Pfam Phloem protein 2 124 282 IPR025886 -
Vra1g1919 292 PANTHER F-BOX PROTEIN 1 292 - -
Vra1g1919 292 SUPERFAMILY F-box domain 16 103 IPR036047 GO:0005515
Vra1g1919 292 MobiDBLite consensus disorder prediction 1 25 - -
Vra1g1919 292 PANTHER F-BOX PROTEIN PP2-A15 1 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1919 Vra-Chr1 36449840 36453582 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1919 - - pvu:PHAVU_004G121100g 536.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2271 8 40969135 40972037 Vra1g1919 1 36449840 36453582 ECH
Vra1g1919 1 36449840 36453582 Vra1g1919 1 36449840 36453582 ECH
Vra1g1919 1 36449840 36453582 Vra8g2271 8 40969135 40972037 PCT