Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0587 ATGATGAGTTCGGCGGCGAGGGTGCCCAAGTTGGGCTCCTTCCGTCACAGCTTCGCCGAGAAGAAAGAGAGGCTGCTCTCCATGAAGGGTGGAGGTTACTCCCAAATTGGGATCGCTCTGCCGGAGTCCGACGAGGAGGACAACTCGCCGCGGAGGCGATGCTGCTCATACCGCGCTGTCTCCGACGGGATAATCGGCGCGTGGAAGAGCACGAAGCGCGTGACGGCGCGAGCGTGGGAGATGGGGATGTCTGATCCCAGGAAGATCATATTCTCCGCAAAAATGGGACTCGCTCTCATTCTCCTTTCTCTTCTGATTTTCCTCAAAAAGCCCTTTGAGGACGTTAGTCGATACTCCGTTTGGGCTATTCTCACTGTAGTTGTGGTCTTCGAATTCAGCATAGGGGCAACTCTTAGTAAAGGACTTAACAGAGGATTGGGGACTTTGTTAGCTGGAGGTCTAGCTTTGGGAATGGGAATCTTATCACAGTTGGCTGGAAAATGGGAAGAGCTCATCATAACTGTTAGCATCTTCACTGTAGGGTATCGAACAGGAGAGTTTGTTCAAACAGCTATAAATAGATTTTTGCTCATTGCACTTGGTGCTGCTGTCGCACTCGGGATAAATGTATGCATATATCCAATATGGGCCGGTGAGGATCTGCATAATCTTGTGGCAAAAAATTTCATGGGCGTTGCTGCATCATTGGAAGGTTGTCATAGTTTGTGGAATTGCGTTGTTAATAACTATCTTAATTGTGTTGAATACGAGAGAGTGCCTTCTAAAATTCTTACATACCAAGCTGCAGAGGATGTGGTTTACAAAGGCTACAGATCAGCTGTTGAATCTACAAGCACAGAGGATTCATTAATGGGTTTTGCTGTATGGGAGCCACCTCATGGTAGATATAAAATGCTTAGATATCCATGGCAAAATTATGTGAAAGTAAGTGGGGCTCTAAGGCATTGTGCATTTATGGTCATGGCTATGCATGGATGTATACTTTCTGAAATACAGGTTGAATATGGTCACTGCATTAACTCAAGCTTTTATGAGGCCAAAGCACCACCAGAGAAGAGACAAGTCTTTAAAAGGGAGCTTCAGAAGGTAGGTTCTGAAGGGGCAAAAATTCTAAGGGATCTCGGAAACAAAGTAAAAAAAATGGAGAAACTAGGCGAGGAAGACATTCTTTACGAAGTACACGAGGCAGCAGAAGAATTGCAGCAGAAAATTGACAAAAAATCCTTCCTCCTTGTGAATTCAGAGAGCTGGGAAATCGGAAACCGGCCAAGAGGGGAGGGTGATCCTCAAGATCTCTTGAACGTGGATGAAGAAAGACACTTTTTGGAGTACAAGTCTCTAAGTGAAGCTGTGCTTGATCTCAGAGCTGTCAAAGTTCCAAAAGGTTGGGGAGAACAAGCAGCTCCTGAGAAGAAACCTGCAGTGCCTGTAGGTGTTGGTGATGAAAACATGTTCAGGAAACAGATATCTTGGCCTGCTCATATTTCCTTCACAGCAGATGCAGTGACAAAAGAGGAAGAATCTAAAACTTATGAAAGTGCTAGTTCTTTGTCTCTAGCCACTTTTACATCCCTTCTGATCGAATTTGTGGCAAGGCTCCAGAACCTTGTAGATTCTTTCGAAGAGTTAGGCGAGAGAGCAAAATTTAAGGACCCTCTTGAGCAAGCACCAACAACAACTGGAGGGTTTTGGAATCGGTTGGGTAATGTTTTGACGGTCAAGGATTGA 1749 0.4534 MMSSAARVPKLGSFRHSFAEKKERLLSMKGGGYSQIGIALPESDEEDNSPRRRCCSYRAVSDGIIGAWKSTKRVTARAWEMGMSDPRKIIFSAKMGLALILLSLLIFLKKPFEDVSRYSVWAILTVVVVFEFSIGATLSKGLNRGLGTLLAGGLALGMGILSQLAGKWEELIITVSIFTVGYRTGEFVQTAINRFLLIALGAAVALGINVCIYPIWAGEDLHNLVAKNFMGVAASLEGCHSLWNCVVNNYLNCVEYERVPSKILTYQAAEDVVYKGYRSAVESTSTEDSLMGFAVWEPPHGRYKMLRYPWQNYVKVSGALRHCAFMVMAMHGCILSEIQVEYGHCINSSFYEAKAPPEKRQVFKRELQKVGSEGAKILRDLGNKVKKMEKLGEEDILYEVHEAAEELQQKIDKKSFLLVNSESWEIGNRPRGEGDPQDLLNVDEERHFLEYKSLSEAVLDLRAVKVPKGWGEQAAPEKKPAVPVGVGDENMFRKQISWPAHISFTADAVTKEEESKTYESASSLSLATFTSLLIEFVARLQNLVDSFEELGERAKFKDPLEQAPTTTGGFWNRLGNVLTVKD* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0587 582 PANTHER ALUMINUM-ACTIVATED MALATE TRANSPORTER 10 181 580 - -
Vra1g0587 582 PANTHER ALUMINUM-ACTIVATED MALATE TRANSPORTER 10 7 182 - -
Vra1g0587 582 PANTHER ALUMINUM ACTIVATED MALATE TRANSPORTER FAMILY PROTEIN 181 580 - -
Vra1g0587 582 PANTHER ALUMINUM ACTIVATED MALATE TRANSPORTER FAMILY PROTEIN 7 182 - -
Vra1g0587 582 Pfam Aluminium activated malate transporter 181 551 IPR020966 GO:0015743
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0587 Vra-Chr1 6878323 6884313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0587 10 559 Miscellaneous Gene Families AT3G18440 57.546 0.0 642
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0587 - - gmx:100810157 935.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0587 1 6878323 6884313 Vra7g3136 7 51144616 51147477 ECH
Vra1g0587 1 6878323 6884313 Vra1g0587 1 6878323 6884313 ECH
Vra7g3136 7 51144616 51147477 Vra1g0587 1 6878323 6884313 PCT