Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0574 ATGATGCAACGGTTGGTTGATCATGTTCTTGCTATAACTAAAGAGTCCGTGAAGGCATTTACTTATGAGTCCTTAAACAATATTGTGAGGCTAATCAATGGAATATCTGCCCTTTTGTTGGCATGCCTACCTGGGAAAGCTAATATACTTGAAGGTATCCATGGTTGGGAACTCAGGCCAACTTTCCGTGGACCACGATTTCCGCGGTGGATGGAGAATGGTGTATCCTCTTTCAATCAGTTTGTCCATGATTTTTCTATGGATTCTGACAATTCAAGCCTTGAATACTCGTCCGAAGATGACGATAGTGAAATATATAGTGATGGACTTGAATACCCTCCAACTCCTGGATCTCAGAGTTCTAGAACCTCAGAAGCTGGTATTACCAAATTCAGTAGGCATCAGAAGGATTGGATCCGATTTATCTTACTTTCAATTTTGTTTCCTTTAAAGTTATTGGTGTGGATTCCAGTTAACCTTTTTCGGTTAGTTTATTATGGGGTGTTAAAAGCCATGTCTTTCACCACAAATAAGCGTCCTCCTCATTTACGTGCACACAAGAGAGTGCTGAGTCTCAAGGATCATATTATCCACCGTGCTACTGATAGGAGACGAGGAGTTGTAGAGGATCTTCATCTAGGCATCGAGTTATCTATAGAAGCCGTGTTTGATGTTGTTCACAAGGCAGCACATCTTCTTCTTTCCCCTTCAGAAGCTTTTGGGGCATTAGTCAGGTTGTTTTCGTCTCATGAAAGTGCTGTTAAAGGAGATCATGATGGTGAAGAGGACGCCTCCATATATACAGATACATTAGGTGAAAATGACCCAAAACCCAAAGAGAGAACTGTCAAGTATCAGCCTCTGAATACAGATGCTCGGACATGTCAGGATGTCATAACGGACCTTGGGTATCCATATGAAGCCATTCGTGTGATCACCTCTGATGGATATATTCTTCTTTTGGAAAGAATACCCAGGCGAGATTCAAGAAAAGCTGTTTATCTCCAGCACGGGGTTTTGGATTCATCAATGGGTTGGGTATCTAATGGAATTGTCGGCTCTCCAGCTTTTGCAGCATACGATCAAGGTTATGATGTATTTCTGGGGAATTTTCGTGGTTTGGTTTCACGGGAACATGTCAACAAGAACATATCATCACGTCAATATTGGCGGTATTCCATCAATGAGCATGGGACTGAGGATATTCCTGCTATGATAGAAAAAATCCATGAAGTAAAGACTGCTGAATTGAGGCTTACTAAACCTGATATAGAGGAGGAAACTGATGATGATCAGCCTTACAAACTTTGTGCCATTTGCCATAGTTTGGGAGGAGCTGCTGTGCTGATGTATGTTATTACTCGAAGGATAGAAGGGAAACCCCACAGGCTTTCAAGATTGGTTTTGTTATCACCAGCCGGTTTTCACGAGGACTCTAACATGGTTTTTTCTGTGGCTGAACTTCTACTGGTTTTACTGGCTCCTGTTTTGTCTCTTCTTGTTCCTGCCTTCTATATACCAACCAGATTTTTTCGTATGCTTGTCAACAAGTTAGCGAGGGATCTGCATAACCTACCTGCAGTTGGAGGGTTGGTTCAAACTTTAATGAGTTATGTTGTAGGTGGAGACAGTTCAAACTGGGTTGGAGTTTTAGGATTACCACACTATAATATGAATGACATGCCAGGAGTGGCTTTTCGTGTTGCTCTCCATCTGTCACAGATGAAGCGCACTGGAAAATTCATAATGTTTGATTATGGTAGTACTTCTGCCAACATGGAAGTGTATGGTTCACCTGTGCCTTTAGACTTGGGTGAACGCTATGAACTCATAGACATTCCTGTTAATCTTGTTGCTGGACAGAAGGACAAAGTGATAAGGCCTTCAATGGTGAAGAGACACTATAAACTGATGAAGGGTGCTGGGGTAGATGTTTCATATAATGAGTTTGAATATGCACACCTAGACTTCACCTTTTCCCACCATGAAGAACTCTTGTCATTTGTTATGTCATGCTTGCTGCTTGTGGATCCTAATCCAAAACATCAAGTGAATCAAAGGGGTGTAAGGTCAAGAAGAAAAGGGCAAGTTGCAAACAGTGGTTAG 2106 0.4179 MMQRLVDHVLAITKESVKAFTYESLNNIVRLINGISALLLACLPGKANILEGIHGWELRPTFRGPRFPRWMENGVSSFNQFVHDFSMDSDNSSLEYSSEDDDSEIYSDGLEYPPTPGSQSSRTSEAGITKFSRHQKDWIRFILLSILFPLKLLVWIPVNLFRLVYYGVLKAMSFTTNKRPPHLRAHKRVLSLKDHIIHRATDRRRGVVEDLHLGIELSIEAVFDVVHKAAHLLLSPSEAFGALVRLFSSHESAVKGDHDGEEDASIYTDTLGENDPKPKERTVKYQPLNTDARTCQDVITDLGYPYEAIRVITSDGYILLLERIPRRDSRKAVYLQHGVLDSSMGWVSNGIVGSPAFAAYDQGYDVFLGNFRGLVSREHVNKNISSRQYWRYSINEHGTEDIPAMIEKIHEVKTAELRLTKPDIEEETDDDQPYKLCAICHSLGGAAVLMYVITRRIEGKPHRLSRLVLLSPAGFHEDSNMVFSVAELLLVLLAPVLSLLVPAFYIPTRFFRMLVNKLARDLHNLPAVGGLVQTLMSYVVGGDSSNWVGVLGLPHYNMNDMPGVAFRVALHLSQMKRTGKFIMFDYGSTSANMEVYGSPVPLDLGERYELIDIPVNLVAGQKDKVIRPSMVKRHYKLMKGAGVDVSYNEFEYAHLDFTFSHHEELLSFVMSCLLLVDPNPKHQVNQRGVRSRRKGQVANSG* 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0574 701 MobiDBLite consensus disorder prediction 682 701 - -
Vra1g0574 701 Pfam Partial alpha/beta-hydrolase lipase region 296 350 IPR006693 GO:0006629
Vra1g0574 701 PANTHER LYSOSOMAL ACID LIPASE-RELATED 9 684 - -
Vra1g0574 701 SUPERFAMILY alpha/beta-Hydrolases 293 668 IPR029058 -
Vra1g0574 701 Gene3D alpha/beta hydrolase 284 673 IPR029058 -
Vra1g0574 701 MobiDBLite consensus disorder prediction 92 126 - -
Vra1g0574 701 MobiDBLite consensus disorder prediction 255 280 - -
Vra1g0574 701 PANTHER ALPHA/BETA HYDROLASE FAMILY PROTEIN 9 684 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0574 Vra-Chr1 6717118 6722691 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0574 2 685 Lipid Metabolism Gene Families AT1G18460 67.733 0.0 928
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0574 - - gmx:100785512 1208.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0574 1 6717118 6722691 Vra1g0574 1 6717118 6722691 ECH
Vra7g3128 7 51079591 51083641 Vra1g0574 1 6717118 6722691 PCT