Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1301 ATGGGCTATCAGCTGGTTCAGATAGTTACACTGCTGACAGTGATGGCATTTGGAGGAGCATTAAGGAAAGTAATAGGAGAATGCAGTTCAGATGATTTGGAAGGTTTGATGGCATTCAAGAATGGCATTCAGATGGATACATCTGGCCGGTTGGCAAAGTGGGTTGGTAGGAACTGCTGTGAATGGGAAGGTGTTGTCTGTGACAATGCAACCACCAGAGTGACACAGATCCTTCTCCCAGGCCTCAATGAAAAGGATTTTGTTCAAACACAGATGGTGGGCCAGCTTTCTCCTTCCATGACACTCCTCACCTCTCTTGAAATCCTTGATCTCGGTGGCTTAGTAGGCCTCAGTGGAGCAATTCCCCAAACAATTGGGTTGCAAATGCCAAAGCTCCAAAAGCTTTACCTTTATGGTAACAATTTAACTGGCCCAGTACCAGAAAGCATTGGTGATTTTCCAAACCTCCAGGAACTGGCACTGCATGAAAATAGGATATCTGGGTCAATCCCTTCTAGCCTTGGAAGTTTAAGAAAACTCAAAAGGCTGCTGCTTTACTCAAACCAAATTTCAGGTACAATACCCTTCTCACTTGGGAGTTTGACCAATTTGGTAGAACTGGATGTTCATGACAATGCTCTTATGGGTCATATACCCAACAGCATTGGTCAGATGCTGTCTTTAGAGAAGCTTGATCTTTCAAGCAATATGTTAAGTGGAAGCATACCTTCTTCAATAACCAATTTAACTGCCATTTCAGTTTTGTATTTTGACACCAACTATCTTGAGGGAACCATCCCCTTTCCCTCAAGACCTGGTGAAATGCCTTCACTGAGCTTCCTAAGACTCCACAATAACCACCTTAGTGGAAACATATCTCCCAGTTTTGGCTACCTGGTTTCTCTTCAAAGAGTTTCATTATCAAACAACAAACTTGAAGGAGCATTGCCTTCTAGTTTGGGCAATTTGCATTCTTTGACAGAGCTATACCTCAGTGACAACTCCTTCTCTGGCCAGATACCAAAATCAATAGGCCAGCTCTCTCAGCTCATTATGTTGAACATTTCCAACAATTTGATTCAATGGCCATTGCCTCAGGAGATGTCTTCCCTTCAAAACCTTCAGACACTTGATCTATCTTTCAACCCTTTGAACCTCTCTTCCATTCCACCATGGCTTACAAGTATGTCTTCTCTTTCCCGTCTTTACCTGGCAGCCTGTGGCATCAAAGGCCAAATTCCAGACTCACTGCAAACAACACAGAGTCCAATACAGGAACTGGATTTATCAGGGAACCTTCTCAGTGGACCAATACCATCATGGTTAGGATCCTTCAGTCAGCTCTACCTGCTAAACCTCTCAAGTAATTCACTTGAGTTACACATACCTGATTCCCTCACAAACTTGCCTGATCTTGGTGTTCTTGATCTTCACTCAAACAAGTTAACAGGCTCCATAACTGGAGTATTTAACACTGCTCAACAAGGTACTTCTGGGGGATCACTAACATACATTGATCTTTCTGATAACAACTTCTCAAGTGGAGTTGAGGCAATTGGTGTGGGAGAACAGTTAAACATTCAACATCTTAATTTGTCTCATAACCTTCTGAAGGGCACATTGCCAGGTTCCCTTGGGAGGCTGAACTCCATTCACAGTTTGGATTTGAGCTTCAATGAATTAGCTTCCAACTTACCTGAAGTCCTGGCAAAGTTGACCTTGTTGGAGAGTCTGAAGCTGCAAAGTAATCATTTCAGTGGAAACATACCCAATGGATTTCTCAAGCTGAGAAAGCTGAAGGAATTGGACTTATCAGATAATGTACTTGAAGGGGAAATTCCAAAGGGTAAGCCTCTAATTGATTTTCCTGGGAGTACTTATTCTGGAAATAAAGGTTTGTGTGGAAAGCCTCTCAGTCCCTGTAAACTTTGA 1932 0.427 MGYQLVQIVTLLTVMAFGGALRKVIGECSSDDLEGLMAFKNGIQMDTSGRLAKWVGRNCCEWEGVVCDNATTRVTQILLPGLNEKDFVQTQMVGQLSPSMTLLTSLEILDLGGLVGLSGAIPQTIGLQMPKLQKLYLYGNNLTGPVPESIGDFPNLQELALHENRISGSIPSSLGSLRKLKRLLLYSNQISGTIPFSLGSLTNLVELDVHDNALMGHIPNSIGQMLSLEKLDLSSNMLSGSIPSSITNLTAISVLYFDTNYLEGTIPFPSRPGEMPSLSFLRLHNNHLSGNISPSFGYLVSLQRVSLSNNKLEGALPSSLGNLHSLTELYLSDNSFSGQIPKSIGQLSQLIMLNISNNLIQWPLPQEMSSLQNLQTLDLSFNPLNLSSIPPWLTSMSSLSRLYLAACGIKGQIPDSLQTTQSPIQELDLSGNLLSGPIPSWLGSFSQLYLLNLSSNSLELHIPDSLTNLPDLGVLDLHSNKLTGSITGVFNTAQQGTSGGSLTYIDLSDNNFSSGVEAIGVGEQLNIQHLNLSHNLLKGTLPGSLGRLNSIHSLDLSFNELASNLPEVLAKLTLLESLKLQSNHFSGNIPNGFLKLRKLKELDLSDNVLEGEIPKGKPLIDFPGSTYSGNKGLCGKPLSPCKL* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1301 643 Gene3D Ribonuclease Inhibitor 352 643 IPR032675 -
Vra11g1301 643 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 3 642 - -
Vra11g1301 643 Pfam Leucine Rich Repeat 227 249 IPR001611 GO:0005515
Vra11g1301 643 Pfam Leucine Rich Repeat 373 391 IPR001611 GO:0005515
Vra11g1301 643 Gene3D Ribonuclease Inhibitor 200 270 IPR032675 -
Vra11g1301 643 SMART LRR_sd22_2 548 567 - -
Vra11g1301 643 SMART LRR_sd22_2 596 611 - -
Vra11g1301 643 SMART LRR_sd22_2 323 349 - -
Vra11g1301 643 SMART LRR_sd22_2 371 388 - -
Vra11g1301 643 SMART LRR_sd22_2 177 209 - -
Vra11g1301 643 SMART LRR_sd22_2 225 251 - -
Vra11g1301 643 Gene3D Ribonuclease Inhibitor 29 197 IPR032675 -
Vra11g1301 643 Gene3D Ribonuclease Inhibitor 271 351 IPR032675 -
Vra11g1301 643 Pfam Leucine rich repeat 276 335 IPR001611 GO:0005515
Vra11g1301 643 Pfam Leucine rich repeat 130 190 IPR001611 GO:0005515
Vra11g1301 643 Pfam Leucine rich repeat 424 482 IPR001611 GO:0005515
Vra11g1301 643 SUPERFAMILY L domain-like 218 616 - -
Vra11g1301 643 Pfam Leucine rich repeat N-terminal domain 30 68 IPR013210 -
Vra11g1301 643 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE GSO1 3 642 - -
Vra11g1301 643 SUPERFAMILY L domain-like 27 312 - -
Vra11g1301 643 SMART LRR_typ_2 299 322 IPR003591 -
Vra11g1301 643 SMART LRR_typ_2 129 152 IPR003591 -
Vra11g1301 643 SMART LRR_typ_2 323 347 IPR003591 -
Vra11g1301 643 SMART LRR_typ_2 201 224 IPR003591 -
Vra11g1301 643 SMART LRR_typ_2 153 177 IPR003591 -
Vra11g1301 643 SMART LRR_typ_2 596 618 IPR003591 -
Vra11g1301 643 SMART LRR_typ_2 469 492 IPR003591 -
Vra11g1301 643 SMART LRR_typ_2 572 595 IPR003591 -
Vra11g1301 643 SMART LRR_typ_2 275 298 IPR003591 -
Vra11g1301 643 SMART LRR_typ_2 371 396 IPR003591 -
Vra11g1301 643 SMART LRR_typ_2 225 249 IPR003591 -
Vra11g1301 643 SMART LRR_typ_2 548 571 IPR003591 -
Vra11g1301 643 PRINTS Leucine-rich repeat signature 228 241 - -
Vra11g1301 643 PRINTS Leucine-rich repeat signature 371 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1301 Vra-Chr11 15959396 15961965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1301 4 643 Receptor kinase-like Gene Family AT4G08850 31.350 4.88e-82 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1301 - - gmx:100799647 1098.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1301 11 15959396 15961965 Vra11g1301 11 15959396 15961965 ECH
Vra11g1301 11 15959396 15961965 Vra7g0605 7 11294702 11297406 PCT