Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1299 ATGAAGAGGGGCAGTAAAGTAGACCTTTTTGTGCTACCCAACAGGCTCACACTGCTTCAGATTTTCATGGTGGTGATGCTCTTTTACTTGCTCTTCATGAGCTTCGAAATCCCTCTCGCTTTCAGAGCCGGGTTGGCTTCCGATAATGACGCTGTTTTTCTCACCGACGCATTGCCCATGTCCATGCCGCTCTTGCTTGAAGAACCGAACCATGGGGTACAAATTCGAGGGCCCAGGGGGTTGAAGTTGGAGAAAGTTTCCTCCTTGAGGTTCAACGGGAGCTTCTCGGAGGGTTCGGAGCTGCACAAGGTGGCGCGGCACGCATGGGTCGCTGGGGAGAAGCTCTGGGGGGATGTGGTCAGTGGGAAAGTGAAGAGTTTTGCAAAGGTGACGGTTGAAAACGGGTCAGACTCGTGCCCGAATTCGGTTTCGGTTTCCGGGGCGGGGTTTCGGGGGAAAGGGGTGATGGTGCTGCCGTGCGGACTGACGCTCTGGTCGCACGTGACGGTGGTGGGGACGCCACGGTGGGCGCATGCGGAGAGGGACCCTAAGATAGCGGTTGTGAGGGACGGGGATGAGGCGGTGATGGTGTCGCAGTTCATGATGGAGTTGCAGGGATTGAAGGCTGTGGACAAAGAGGAACCGCCGAGGATTCTGCATTTCAATCCGAGGCTGAGAGGGGATTGGAGTGGGAAGCCTGTGATTGAGCAGAATACTTGCTACAGGATGCAGTGGGGTTCTGCTCTCAGGTGTGAGGGGTGGAAGTCTCGAGCGGATGAGGAAACTGTTGATGGACATGTAAAATGTGAAAAGTGGATTCGGGATGACAACAATCGTTCTGAAGAGTGGAAGGCAACATGGTGGCTAAACAGATTGATAGGACGAAAGAAGAAGGTGACAATTGACTGGCCATATCCTTTTGCAGAGGGTAAGTTATTTGTTCTCACCATAAGTGCTGGCTTGGAAGGTTACCATGTTAGTGTGGATGGAAGGCATGTCACATCCTTTCCCTATCGGACGGGATTTGCTCTTGAGGATGCTACTGGACTATCCATAAATGGGGATGTTGATGTGCACTCTATATTTGCTGCTTCCTTGCCTACATCACATCCTAGCTTTGCTCCACAGATGCATCTTGAATTGCTTCCTCAGTGGAAAGCTCCTCCACTTCACAATGTGAATGTGGATCTTTTCATTGGTATTCTTTCTGCTGGAAATCATTTTGCTGAACGGATGGCTGTGAGGAAGTCCTGGATGCAGCACAAACTAATAAAATCTTCACATGTTGTGGCTCGATTTTTTGTAGCCTTGCATGCAAGGAAGGATATAAATGTGGACATAAAGAAAGAAGCAGAGTATTTCAATGATATTATTATAGTCCCATACATGGATCATTATGACCTTGTTGTGTTGAAGACCATAGCTATCTGTGAATACGGGATTAATACAGTGGCTGCAAAGTATATCATGAAGTGTGATGATGACACATTTGTCAGAGTGGATTCTATAGTAAATGATGTAAGACAAGCTCAAACTGATAGAAGTCTCTACATGGGAAATATGAATTACCACCACAGGCCTCTTCGCTACGGAAAATGGGCTGTAACTTATGAGGAATGGGTAGAGGAAGAGTATCCTATATATGCCAATGGTCCAGGTTACATAGTCTCAGCTGACATTGCACAATTCATTGTATCTGAATTCGAGAAGCGCAAATTAAAATTATTTAAAATGGAGGATGTGAGCATGGGAATGTGGGTGGAGCAGTTCAACAGCACAAGAGCAGTAGAATATGTGCACAACTTGAAGTTCTGTCAATTTGGGTGTGTTGAAGAGTACTACACTGCACATTACCAATCACCAAGACAAATGACATGCATGTGGGAAAAATTGCAACATCAAGGAAAACCACTATGTTGCAACATGAGATGA 1932 0.4705 MKRGSKVDLFVLPNRLTLLQIFMVVMLFYLLFMSFEIPLAFRAGLASDNDAVFLTDALPMSMPLLLEEPNHGVQIRGPRGLKLEKVSSLRFNGSFSEGSELHKVARHAWVAGEKLWGDVVSGKVKSFAKVTVENGSDSCPNSVSVSGAGFRGKGVMVLPCGLTLWSHVTVVGTPRWAHAERDPKIAVVRDGDEAVMVSQFMMELQGLKAVDKEEPPRILHFNPRLRGDWSGKPVIEQNTCYRMQWGSALRCEGWKSRADEETVDGHVKCEKWIRDDNNRSEEWKATWWLNRLIGRKKKVTIDWPYPFAEGKLFVLTISAGLEGYHVSVDGRHVTSFPYRTGFALEDATGLSINGDVDVHSIFAASLPTSHPSFAPQMHLELLPQWKAPPLHNVNVDLFIGILSAGNHFAERMAVRKSWMQHKLIKSSHVVARFFVALHARKDINVDIKKEAEYFNDIIIVPYMDHYDLVVLKTIAICEYGINTVAAKYIMKCDDDTFVRVDSIVNDVRQAQTDRSLYMGNMNYHHRPLRYGKWAVTYEEWVEEEYPIYANGPGYIVSADIAQFIVSEFEKRKLKLFKMEDVSMGMWVEQFNSTRAVEYVHNLKFCQFGCVEEYYTAHYQSPRQMTCMWEKLQHQGKPLCCNMR* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1299 643 Pfam Galactosyltransferase 410 590 IPR002659 GO:0006486|GO:0016020|GO:0016758
Vra11g1299 643 Pfam Galactoside-binding lectin 155 362 IPR001079 GO:0030246
Vra11g1299 643 SUPERFAMILY Concanavalin A-like lectins/glucanases 156 362 IPR013320 -
Vra11g1299 643 PANTHER BETA-1,3-GALACTOSYLTRANSFERASE-LIKE PROTEIN 7 643 - -
Vra11g1299 643 SMART Gal_bind_lectin_2 158 363 IPR001079 GO:0030246
Vra11g1299 643 ProSiteProfiles Galactoside-binding lectin (galectin) domain profile. 154 364 IPR001079 GO:0030246
Vra11g1299 643 Gene3D - 387 636 - -
Vra11g1299 643 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 7 643 IPR002659 GO:0006486|GO:0016020|GO:0016758
Vra11g1299 643 CDD GLECT 158 362 IPR001079 GO:0030246
Vra11g1299 643 Gene3D - 192 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1299 Vra-Chr11 15923817 15928722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1299 6 643 Glycosyltransferase AT1G74800 60.180 0.0 827
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1299 K20843 - gmx:100803219 1221.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1299 11 15923817 15928722 Vra11g1299 11 15923817 15928722 ECH
Vra11g1299 11 15923817 15928722 Vra7g0607 7 11319589 11325125 PCT