Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1276 ATGTCGGCTAAGGGAAAAAACCTCTCTTTCTCTCACTCTGCCTGCTCATTTCTCTTCTGCAGAAATGGTATTTCTGCAACTTCACCACCAGACACACACAAAAACAGCGATGAGCTAAGCAAAAACAGTTCAAGATCGGGAGATTACAAGAAGCCAGGAGGATGGAAGGCTATGCCTTTTATTTTAGGCAATGAAACTTTTGAGAGGTTGGCAGCATTTGGTTTGTTTGCTAACTTTATGGTGTACTTAACAAGAGAGTTTCATTTGGATCAAGTTTATGCTTCCAACATTCTCAACCTATGGAGTGGTGTTACCAACTTTTTCCCTTTGATTGGTGCCTTCATTTCTGATGCTTATGTTGGTCGCTTCCGAACTATAGCTTTTTGTTCCTTTTCTTCTCTACTGGGAATGGTGATGGTGAGTTTAACGGCATGGTTACCAAAGTTGCATCCTCCATCATGCAGTCCTGATCAACAAGCACTGAATCAATGTGTTAGAGCTAGCACACCTCACCTAGGTGTCCTACTATCGGGACTTTGCCTTTTAAGCGTAGGGTCTGCTGGCATAAGGCCATGTAGCATTCCTTTTGGTGTTGATCAATTTGACCCCACCACAGATGAAGGGAAGAAAGGGATCAATAGCTTCTTCAATTGGTACTACACCACCTTCACAGTTGTTTTGTTGATCACTCAAACAGTGGTTGTCTATATTCAAGACTCCGTTAGCTGGAAAATAGGTTTCGCCATCCCAACCCTCTGCATGCTTTCTTCCATCATCATGTTCTTTGTCGGAACAAGGATCTACGTGCATGTCAAACCAGAAGGAAGCATTTTCTCTAGCATTGCACAAGTTCTGGTCGCTGCTTACAGAAAGAGAAAACTTCAGCTTCCAACTGACAAACAACTTGATGGAGTTTTCTATGATCCTCCACTTGTTGGAACTCGTGTGTTCTCAAAGCTACCGTTCACCAACCAATTCAGGGCTTTGAATAAAGCAGCTGTAGTGACGGAGGGGGAGGTAAACCCTGATGGGAGTAGAGTTAACAAGTGGAAGCTTGTGAGCATCCAGGAAGTAGAAGAGGTGAAATGTTTGGCAAGAGTTTTTCCAATTTGGGCTGCTGGGATCCTTGGTTTCACTTCCATGGCACAGCAAGGAACATTTACTGTATCACAAGCCATGAAAATGGACAGACACCTAGGACCGAATTTTCAAATCCCAGCAGGTTCACTTGGGGTGATATCATTCATCACCATAGGTGTGTGGGTTCCATTCTATGACAGAATCATGGTGCCAGCACTGAGAAGAGTGACGAAACATGAAGGGGGCATCACTCTCCTGCAGAGAATTGGAATTGGTATGGTGTTTTCCGTTCTGTCTATGGTTGCTGCTGGTCTGGTGGAAAAAGTGAGAAGAGAGACGGCAAATGCAAATCCAAGTCCACTTGGTATTGCTCCAATGTCAGTTCTTTGGCTGGTCCCACAGCTGGTCCTGATGGGTCTGTGTGAGGCATTCAATGTAATTGGACAGATTGAGTTCTTCAACAGACAATTTCCTGAGAACATGAGAAGCATTGCAAATGCTTTGTTCTCATGCTCTTTTGCTGGGGCCAGCTATGTTAGCAGTGCACTTGTCACCACTGTTCATCATGCCACAGGAACACATAGCCATCCTGATTGGTTGACAAATGATATAAATTCTGGCAGGCTAGATTACTTTTACTATCTTGTTGCAGGAATTGGAGTCCTCAACTTCATTTATTTTCTCTTTGTGGCTCAAAGATATCACTACAAGGGAATTTCTGCCCTCCCTCAAGATCTGGAGTTAGGTTCAAAAGGAGAATTAAGTCACTATACTGCTGCTAACTGTGAAGATTCTACATAA 1881 0.4354 MSAKGKNLSFSHSACSFLFCRNGISATSPPDTHKNSDELSKNSSRSGDYKKPGGWKAMPFILGNETFERLAAFGLFANFMVYLTREFHLDQVYASNILNLWSGVTNFFPLIGAFISDAYVGRFRTIAFCSFSSLLGMVMVSLTAWLPKLHPPSCSPDQQALNQCVRASTPHLGVLLSGLCLLSVGSAGIRPCSIPFGVDQFDPTTDEGKKGINSFFNWYYTTFTVVLLITQTVVVYIQDSVSWKIGFAIPTLCMLSSIIMFFVGTRIYVHVKPEGSIFSSIAQVLVAAYRKRKLQLPTDKQLDGVFYDPPLVGTRVFSKLPFTNQFRALNKAAVVTEGEVNPDGSRVNKWKLVSIQEVEEVKCLARVFPIWAAGILGFTSMAQQGTFTVSQAMKMDRHLGPNFQIPAGSLGVISFITIGVWVPFYDRIMVPALRRVTKHEGGITLLQRIGIGMVFSVLSMVAAGLVEKVRRETANANPSPLGIAPMSVLWLVPQLVLMGLCEAFNVIGQIEFFNRQFPENMRSIANALFSCSFAGASYVSSALVTTVHHATGTHSHPDWLTNDINSGRLDYFYYLVAGIGVLNFIYFLFVAQRYHYKGISALPQDLELGSKGELSHYTAANCEDST* 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1276 626 CDD MFS_NPF1_2 58 594 - -
Vra11g1276 626 PANTHER PEPTIDE/NITRATE TRANSPORTER 42 605 - -
Vra11g1276 626 Pfam POT family 123 553 IPR000109 GO:0016020|GO:0022857|GO:0055085
Vra11g1276 626 MobiDBLite consensus disorder prediction 28 50 - -
Vra11g1276 626 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 42 605 IPR000109 GO:0016020|GO:0022857|GO:0055085
Vra11g1276 626 SUPERFAMILY MFS general substrate transporter 71 593 IPR036259 -
Vra11g1276 626 Gene3D MFS general substrate transporter like domains 28 600 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1276 Vra-Chr11 15454428 15459796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1276 50 597 Organic Solute Cotransporters AT1G69870 63.321 0.0 740
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1276 - - gmx:100815154 1065.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1276 11 15454428 15459796 Vra11g1276 11 15454428 15459796 ECH
Vra7g0621 7 11613555 11618734 Vra11g1276 11 15454428 15459796 PCT