Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0843 ATGGCGACGACACGATCCGCGCCACTCCTCAAACACCTCCTGGCCCGCCTGAATCCGGCCCGATCCGTCACATACATGCCTCGGCCCGGCGACGGCACCCCGCGGGCGGTGACGCTGATCCCGGGCGACGGGATCGGTCCGCTGGTGACCGGCGCAGTGGAGCAGGTTATGGAGGCGATGCATGCGCCAGTGTACTTCGAGAAGTATGAGGTGTACGGCGACATGAAGGCGGTGCCGCCGGAGGTGCTGGATTCGATTAGGAAGAATAAGGTGTGTTTAAAGGGAGGGCTGGCAACGCCTATGGGCGGCGGTGTGAGCTCGCTGAACGTGCAGCTGAGGAAGGAGCTTGATCTCTACGCTTCGCTCGTTAACTGCTTCAACCTCCCTGGCCTTCCCACGCGCCACGAGAACGTTGACATAGTCGTCATCAGAGAAAACACAGAGGGCGAGTACTCCGGGCTCGAACACGAGGTTGTTCCCGGCGTCGTTGAAAGCCTCAAGTTCTGTTCAGAGCGCATTGCTAAATATGCTTTCGAGTATGCTTACCTAAATAATAGAAAGAAGGTGACTGCTGTGCACAAAGCAAACATTATGAAACTTGCAGATGGTTTATTCTTGGAATCTTGTCGAGAGGTTGCCACAAGGTATCCTGGTATCAAGTATAATGAAATCATTGTAGACAACTGCTGCATGCAGCTTGTTTCAAAGCCTGAGCAGTTTGATGTCATGGTAACCCCCAATCTTTATGGGAATCTTGTTGCAAATACAGCGGCAGGTATTGCTGGAGGCACCGGAGTCATGCCTGGAGGTAATGTCGGGGCTGATCACGCTGTGTTTGAACAAGGTGCTTCAGCAGGAAATGTTGGTAATGAGAAAGTAGTAGAACAACAGAAAGCCAACCCAGTGGCACTCCTTCTTTCGTCGGCCATGATGCTTCGACATCTTCAGTTTCCTGCATTTGCTGATCGATTGGAAACTGCCGTTAAAAAGGTGATTTTGGAGGGTAAATATCGGACAAAGGACCTTGGAGGCACAAGCACCACACAAGAGGTAGTTGATGCAGTGATAAATGCTTTAGATTGA 1083 0.5189 MATTRSAPLLKHLLARLNPARSVTYMPRPGDGTPRAVTLIPGDGIGPLVTGAVEQVMEAMHAPVYFEKYEVYGDMKAVPPEVLDSIRKNKVCLKGGLATPMGGGVSSLNVQLRKELDLYASLVNCFNLPGLPTRHENVDIVVIRENTEGEYSGLEHEVVPGVVESLKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVATRYPGIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGADHAVFEQGASAGNVGNEKVVEQQKANPVALLLSSAMMLRHLQFPAFADRLETAVKKVILEGKYRTKDLGGTSTTQEVVDAVINALD* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0843 360 PANTHER NAD-DEPENDENT ISOCITRATE DEHYDROGENASE C,1 19 358 - -
Vra11g0843 360 Pfam Isocitrate/isopropylmalate dehydrogenase 37 355 IPR024084 -
Vra11g0843 360 PANTHER DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE 19 358 - -
Vra11g0843 360 SMART Iso_dh_2 36 355 IPR024084 -
Vra11g0843 360 TIGRFAM mito_nad_idh: isocitrate dehydrogenase, NAD-dependent 33 359 IPR004434 GO:0006099
Vra11g0843 360 Gene3D Isopropylmalate Dehydrogenase 24 358 - -
Vra11g0843 360 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 35 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0843 Vra-Chr11 7035400 7038914 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0843 K00030 - gmx:100778831 680.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0843 11 7035400 7038914 Vra11g0843 11 7035400 7038914 ECH
Vra11g0843 11 7035400 7038914 Vra7g0195 7 2961298 2965639 PCT