LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra11g0790	ATGTTAGAGAGAATGACTATAATTTCAGAGTGTTTCTGTGTTATTCTCCTGCTTTATTCATGTGGCTCCGTAGTTTGTGTTAAATACAACACTGGAGCAAGTATTGTGCCAGGCAAATTGAATGTTCATCTTGTTGCTCATTCCCATGATGATGTTGGCTGGCTCAAGACCGTTGATCAATACTATGTTGGGTCCAACCATACAATTCAGGGGGCATGTGTGGAGAATGTGCTGGATTCGGTGGTTATGTCCCTGCAGCGAGACCAAAACAGGAAGTTTGTATTCGCTGAGATGGCATTTTTCCATAGATGGTGGGTGGAACAAACTCCAGAAACACAAGCGCAAGTGACAAAGCTTGTGGATGGTGGCCAGCTAGAATTTGTAAATGGTGGTTGGTGCATGCATGATGAAGCAACTACTCACTACGTAGACATGATTGATCAAACGACTCTGGGTCACCGCTTCATCAAAAACCAATTCAACAAGGTCCCTCGTGCAGGATGGCAGATTGATACCTTTGGACATTCTGCTGTTCAAGCTTATTTGCTTGGTGCTGAGCTTGGTTTTGATTCAGTGCACTTCGCTAGGATTGATTATCAGGACAGAGAAAAACGCAAAGTTGATAAAACTCTTGAAGCTGTGTGGCGTGGCTCCAAGACATTTGGCTCTTCAGCCCAGATTTTTTCCAACACTTTTCCTGTTCGTTATGGTCCACCGGAAAACTTCCATTTTGAAGTCAATGACGACTTTGTTCCCATACAGGATGATCCCCTTCTATTTGATTACAATGTGGAACAGCGAGTCCGGGACTTCATTGCTGCTGCTATTACACAAGCAAATGTGACTAGGACGAACCATATCATGTGGACAATGGGCGATGATTTCCAGTACCAATATGCAGAGAGTTGGTTCAAGCAAATGGATAAACTAATTCACCATGTTAACAAGGATGGCAGAATGAATGCTTTATATTCTACCCCATCTATTTACACTGATGCAAAAAATGCTGCAAATCAACAATGGCCACTGAAAATTGATGATTACTTCCCGTATGCAGATGGTCCACATGATTGTTGGACAGGCTATTACACCAGTCGCCCAGCCTTTAAGCGATATGTTAGGATCCTAAGTGGATACTATTTGGCAGCACGCCAACTTGAATTTTTTGCGGGAAAGAAATCCACTGTAAACCACACTTCAGACCTTGGAGATGCTCTGGCCATTGCACAGCATCATGATGCTGTCTCTGGCACTGCCAAGCAACACACAACTGATGACTATGCAAAACGACTTGCCATTGGAGCCTCAAGGGCTGAGGATGTTGTTAGTTCCTCTTTGTATTTCCTTAGTAGCAAGAAAAGCACAGCACCCACATCGGCATTTTCCCAGTGTCAATTACTCAACATCAGTTACTGTCCACCAACAGAAGACAGTATTCCACAAGCTAATAGTTTGGTATTAGTGGTGTATAACCCACTTGGATGGAATCGTTCAGACATTTTAAGAATTCCAGTTAATGACGCAAACCTTGTTGTCAAAGATTCATTGGGAAATAATGTTCAAACACAATACATAGAAGTGGATAGTGTTACAGCAAATTTAAGAGAAATCTACGTCAAAGTCTATCTTGGGGTGTCACCAAAACAAGCCCCAAAGTACTGGCTTCTGTTTCAGGCTTCAGTACCTCCACTTGGATGGAGTACGTATTTCATTTCTAAAACAGAAAAAAAAGTTGAAAGCAGAAAGGGATTTCTTTCGCACCTCACCACCAGTCAGAGAAACGATACAATTGAAGTAGGACCTGGAAATTTGAAGCTGTCTTTTTCTTCAAGGTCTGGACAACTCATACGCATGCATAATTCCAGAACTGGAGTAGATGTACAAATTCAGCAAAGCTATCTCTGGTATAATTCTAGTGATTCTGGCGCATATACTTTTCGGCCCGATTCCCCTCCAATTATTGTTTCAAAATCAGTGCCCTTCAAGATAATCCGCGGACCATTAGTGGATGAGGTTCATCAGAATTTTAGTTCATGGATTTACCAGATTACCAGGGTTTACAAAGACAAGGAGCATGCTGAGATTGAATACACTATTGGTTCAATTCCTACGGAGGATGAAGTTGGGAAAGAGGTAATCACACAATTGACAACAGGTATGCTGACAAACAAAGAGTTTTACACTGATTCTAATGGAAGAGATTTTTTGAAACGGGTACGAGATTATAGGGAAGATTGGCCCCTTAAAGTTAATGAGCCAGTAGCAGGCAACTATTATCCACTCAATCTTGGAATTTATATTAAGGATAAGAAATCTGAATTATCAATCTTAGTTGATCGGGCTACTGGAGGAGGCAGTATAAAAGATGGTCAGGTGGAACTCATGCTTCATAGGCGACTGCTTTCTGATGATGGCAAAGGAGTAAACGAAAATCTTGACGAACAAGTGTGCCAAAATAATAATTGTCAAGGACTAACAGTAAGAGGAAATTATCATGTGGCCATCCACAACCTTGGAGCTGGTTCACAATGGCGCCGTACAACTGGTCAGGAAATTTATTCACCACTGTTATTGGCGTTTACACATGAGAACATGGGAAATTGGAAGACCTTCCATGAGACCAAAGGAACTCTCATTGACCCTAATTACAGCTTACCTCCCAATGTAGCTCTGATAACTCTCGAGGAGTTGGATGATGGAATGGTGCTTCTCCGTTTGGCGCATCTATATGAGTCTGGTGAAGACGCCCAGCTTTCAACTTTAACCAAAGTTGAATTGAAGAAAATGTTTATCACAAAAACGATAAAGCAGTTGACTGAGGTCAGTTTATCAGCTAACCAAGAGAGGTCAAAAATGAAGAAGAAAACATGGAAGGTTGAAGGGGACAAGGGACAAGAATCAAAAGCAGTTAGGGGTGGTCCTGTCAGCCAAATCACTCTTGTAGTTGAACTTGGTCCAATGGAAATTCGCACTTTCCTACTGAAATTCTAA	2991	0.4176	MLERMTIISECFCVILLLYSCGSVVCVKYNTGASIVPGKLNVHLVAHSHDDVGWLKTVDQYYVGSNHTIQGACVENVLDSVVMSLQRDQNRKFVFAEMAFFHRWWVEQTPETQAQVTKLVDGGQLEFVNGGWCMHDEATTHYVDMIDQTTLGHRFIKNQFNKVPRAGWQIDTFGHSAVQAYLLGAELGFDSVHFARIDYQDREKRKVDKTLEAVWRGSKTFGSSAQIFSNTFPVRYGPPENFHFEVNDDFVPIQDDPLLFDYNVEQRVRDFIAAAITQANVTRTNHIMWTMGDDFQYQYAESWFKQMDKLIHHVNKDGRMNALYSTPSIYTDAKNAANQQWPLKIDDYFPYADGPHDCWTGYYTSRPAFKRYVRILSGYYLAARQLEFFAGKKSTVNHTSDLGDALAIAQHHDAVSGTAKQHTTDDYAKRLAIGASRAEDVVSSSLYFLSSKKSTAPTSAFSQCQLLNISYCPPTEDSIPQANSLVLVVYNPLGWNRSDILRIPVNDANLVVKDSLGNNVQTQYIEVDSVTANLREIYVKVYLGVSPKQAPKYWLLFQASVPPLGWSTYFISKTEKKVESRKGFLSHLTTSQRNDTIEVGPGNLKLSFSSRSGQLIRMHNSRTGVDVQIQQSYLWYNSSDSGAYTFRPDSPPIIVSKSVPFKIIRGPLVDEVHQNFSSWIYQITRVYKDKEHAEIEYTIGSIPTEDEVGKEVITQLTTGMLTNKEFYTDSNGRDFLKRVRDYREDWPLKVNEPVAGNYYPLNLGIYIKDKKSELSILVDRATGGGSIKDGQVELMLHRRLLSDDGKGVNENLDEQVCQNNNCQGLTVRGNYHVAIHNLGAGSQWRRTTGQEIYSPLLLAFTHENMGNWKTFHETKGTLIDPNYSLPPNVALITLEELDDGMVLLRLAHLYESGEDAQLSTLTKVELKKMFITKTIKQLTEVSLSANQERSKMKKKTWKVEGDKGQESKAVRGGPVSQITLVVELGPMEIRTFLLKF*	997

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra11g0790	996	Pfam	Glycosyl hydrolases family 38 C-terminal domain	601	805	IPR011682	GO:0004559\|GO:0006013
	Vra11g0790	996	Gene3D	-	463	574	IPR013780	-
	Vra11g0790	996	SUPERFAMILY	Families 57/38 glycoside transferase middle domain	356	456	IPR028995	-
	Vra11g0790	996	Pfam	Glycosyl hydrolases family 38 C-terminal beta sandwich domain	888	993	IPR041147	-
	Vra11g0790	996	PANTHER	ALPHA-MANNOSIDASE	9	996	-	-
	Vra11g0790	996	SUPERFAMILY	Galactose mutarotase-like	457	996	IPR011013	GO:0003824\|GO:0005975\|GO:0030246
	Vra11g0790	996	SMART	Alpha_mann_mid_2	357	431	IPR015341	GO:0004559\|GO:0006013
	Vra11g0790	996	Gene3D	Glycoside hydrolase 38, N terminal domain	40	320	IPR027291	-
	Vra11g0790	996	Gene3D	Glycoside hydrolase family 38, central domain	400	456	IPR037094	GO:0004559\|GO:0006013
	Vra11g0790	996	Gene3D	-	878	996	-	-
	Vra11g0790	996	PANTHER	ALPHA-MANNOSIDASE	9	996	-	-
	Vra11g0790	996	Gene3D	-	595	854	-	-
	Vra11g0790	996	SUPERFAMILY	Glycoside hydrolase/deacetylase	29	355	IPR011330	GO:0005975
	Vra11g0790	996	Gene3D	Glycoside hydrolase family 38, central domain	321	399	IPR037094	GO:0004559\|GO:0006013
	Vra11g0790	996	Pfam	Glycosyl hydrolases family 38 N-terminal domain	41	352	IPR000602	GO:0004559\|GO:0006013
	Vra11g0790	996	ProSiteProfiles	Prokaryotic membrane lipoprotein lipid attachment site profile.	1	21	-	-
	Vra11g0790	996	CDD	GH38N_AMII_LAM_like	40	316	-	-
	Vra11g0790	996	Pfam	Alpha mannosidase middle domain	358	448	IPR015341	GO:0004559\|GO:0006013

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra11g0790	Vra-Chr11	6503871	6511842	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra11g0790	10	951	Glycoside Hydrolase	AT3G26720	59.440	0.0	1179

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra11g0790	K01191		-	gmx:100806041	1751.87

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vra11g0790	11	6503871	6511842	Vra11g0790	11	6503871	6511842	ECH
	Vra11g0790	11	6503871	6511842	Vra7g0150	7	2481779	2490464	PCT