Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0646 ATGAGTATGCATAAAAGGAAGTTGAAATATGGGTTGAGAAGGAGGGAAGGGAAGAAAGGAATAGAGAGAGAAAATGGTAGTTGCAGTAGAAGAGTAGAAGAGGATATTCACAGAGAGTCTGTGATGGTTGTGGATAAAAGCGGATCAATCATGGGAGTTTCATTAAGAGAAATCATGGCTTCTACTCATCAACTCAATTCCTCTGCATTAATAGCTTTCTGTCTCATCCTTATCATCATTTCGACTAATGCCGCTGCCGTCACTGCACATCAACAACAACACTTCAAACAAGCACCCAAATTCTACAACTCCCCCACCTGTGCCACCACTGCCCTCCAACACACCCAAACCTGTTCCGACCAGGCAGTTCACGTCGCCATGACACTGGATATCACCTACCTCCGGGGCTCCATGGCGGCCATCCTCTCCGTCCTCCAGCACTCCTCCTGTCCAGAAAACGTCATCTTCCACTTCGTCACCGCCGCCTCCAGGGCCTCCTCCTCCGCCCTCCTTAACCGCACCCTCTCCAATTCCTTCCCTTATCTCAATTTCCAAATCTACCCCTTCAACGACCTCCAAGTTGCCGGCCTCATCTCCACCTCCATCCGCTCCGCTCTCGATTGCCCCCTCAACTACGCCCGCAACTACCTCGCTAACCTCCTCCCCTCCTGCGTCCGAAAAATCGTCTACCTCGACTCCGACCTCGTCCTCGTCGACGACATCGCCAAACTCGCTGCCACCCCACTCGGAGACTACAACAGCAACAACACCGTCCTCGCCGCTCCCGAATACTGCAACGCCAACTTCAGTGCCTACTTCACCCCCTCCTTCTGGTCCAACCCCTCTCTCTCCCTCACCTTCGCGAGCCGAAGGCCCTGCTACTTCAACACCGGCGTCATGGTGATTGATTTGCAACGCTGGCGGGCCGGCGACTACACCAGGAAGATCGAGGAGTGGATGGAGCTCCAGAAGAGAATGCGGATCTACGAGCTGGGCTCCCTTCCGCCGTTTCTACTCGTTTTCGCTGGCAACATAGGCGCGGTGGATCACAGGTGGAACCAGCATGGGCTTGGCGGGGATAACTTCCGCGGCCTCTGCAGAGACTTGCATCCAGGCCCGGTGAGCCTCCTGCATTGGAGTGGGAAGGGGAAACCCTGGGCCCGACTCGACGCCAACCGCCCTTGCCCCTTGGATGCCCTGTGGGCTCCCTACGATCTTCTCCAAACTCCTTTCGCTCTGGAAGCCTAG 1248 0.5529 MSMHKRKLKYGLRRREGKKGIERENGSCSRRVEEDIHRESVMVVDKSGSIMGVSLREIMASTHQLNSSALIAFCLILIIISTNAAAVTAHQQQHFKQAPKFYNSPTCATTALQHTQTCSDQAVHVAMTLDITYLRGSMAAILSVLQHSSCPENVIFHFVTAASRASSSALLNRTLSNSFPYLNFQIYPFNDLQVAGLISTSIRSALDCPLNYARNYLANLLPSCVRKIVYLDSDLVLVDDIAKLAATPLGDYNSNNTVLAAPEYCNANFSAYFTPSFWSNPSLSLTFASRRPCYFNTGVMVIDLQRWRAGDYTRKIEEWMELQKRMRIYELGSLPPFLLVFAGNIGAVDHRWNQHGLGGDNFRGLCRDLHPGPVSLLHWSGKGKPWARLDANRPCPLDALWAPYDLLQTPFALEA* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0646 415 Pfam Glycosyl transferase family 8 124 388 IPR002495 GO:0016757
Vra11g0646 415 SUPERFAMILY Nucleotide-diphospho-sugar transferases 123 406 IPR029044 -
Vra11g0646 415 PANTHER HEXOSYLTRANSFERASE 66 415 - -
Vra11g0646 415 MobiDBLite consensus disorder prediction 1 26 - -
Vra11g0646 415 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 124 394 IPR029044 -
Vra11g0646 415 PANTHER GLYCOSYLTRANSFERASE 8 DOMAIN-CONTAINING PROTEIN 66 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0646 Vra-Chr11 5168250 5169966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0646 68 413 Glycosyltransferase AT3G50760 67.049 1.90e-175 491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0646 K20893 - gmx:100783054 575.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0646 11 5168250 5169966 Vra11g0646 11 5168250 5169966 ECH
Vra11g0646 11 5168250 5169966 Vra7g1081 7 26426300 26427598 PCT