Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0645 ATGCCTCCCTCGTACTGCGTGAAGGAGAGCAAACCCTGCGTCGGTTGGGTTCAGCGTTACTTGGATGATTGTCTCTGCGATCTTAAAGATGAAATCTCCTTTTCCTTGGGCTTCATCAGTCTCATATGCTGGGGAGTAGCAGAAATTCCTCAGATTATCACCAACTTTCGAGCTAAGTCTAGCCATGGTGTCTCCCTAGCCTTTCTCCTCACTTGGGTCGCTGGTGACATATTCAATCTCGTTGGTTGTGTTCTGGAGCCTGCCACGTTGCCTACTCAGTACTACACAGCTCTGCTTTACACAATCACTACGATCGTGCTAGTACTTCAAAGCCTCTATTATGACTATATCTATAAATGGAACAAGCGTCGTCGAAATATCAACATCGACGAGGCCCCGGAAGAAGAGAAAAAACCTTTGAGACCCAAACCAGGGGCACAGTCTGGGATTGCAATACCAAATGACGAACCCAAAGCAACGCCCCGACGGGAATACTACTATAGGTCAGCGAGATCTCTGGCTGGTAATGATACTCCACCATTTGGTACCTACTTGAGAGCTGCTAAAAGTGTCCCTTCAGCCATGGAAATGAACAATGATTCATCCTCTGATGATGAGCCACCTCCACTTTCTTCCACCAAGCCTGTAACATTGCCTAGACCCATCCCTCGATCTGTCCCTGCAAGCTATGGAACATTTCTAGCAGCATCTATGAACTTGCCCCGGCAGGGTAATGCTTTGAAGGAGGGATACATGAGATTAAACGGAAGAAAGCTACTCTTGCAGAACTCATCACAGGAGCAAAACATGCACAGTGCCTTGGGTCAATGGTTAGGATGGTTTATGGCTGTGATCTATATGGGTGGCAGGCTCCCTCAAATATGGTTGAATATTAAACGAGGGAGTGTGGAGGGCTTAAATCCTCTGATGTTTCTCTTTGCATTGATCGCCAATGCCACTTACGTTGGAAGTATTCTTGTAAGAACTACCGAATGGGAAAGCATCAGAGCTAATATGCCATGGCTGTTGGATGCCATAGGTTGCGTGGCATTGGATCTATTCATAACTTTTCAGTACGCCAACTATAGATACATTCGAAAGAAAGCAAGAAGTGGTGATGCTGATTACGGAAACTACGAGGAAGCTAGCAAAAGTTTTGTGTCTTGA 1167 0.4602 MPPSYCVKESKPCVGWVQRYLDDCLCDLKDEISFSLGFISLICWGVAEIPQIITNFRAKSSHGVSLAFLLTWVAGDIFNLVGCVLEPATLPTQYYTALLYTITTIVLVLQSLYYDYIYKWNKRRRNINIDEAPEEEKKPLRPKPGAQSGIAIPNDEPKATPRREYYYRSARSLAGNDTPPFGTYLRAAKSVPSAMEMNNDSSSDDEPPPLSSTKPVTLPRPIPRSVPASYGTFLAASMNLPRQGNALKEGYMRLNGRKLLLQNSSQEQNMHSALGQWLGWFMAVIYMGGRLPQIWLNIKRGSVEGLNPLMFLFALIANATYVGSILVRTTEWESIRANMPWLLDAIGCVALDLFITFQYANYRYIRKKARSGDADYGNYEEASKSFVS* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0645 388 SMART ctns 46 77 IPR006603 -
Vra11g0645 388 SMART ctns 288 319 IPR006603 -
Vra11g0645 388 Gene3D - 275 376 - -
Vra11g0645 388 Gene3D - 35 129 - -
Vra11g0645 388 PANTHER SEVEN TRANSMEMBRANE PROTEIN 1-RELATED 3 385 - -
Vra11g0645 388 MobiDBLite consensus disorder prediction 193 221 - -
Vra11g0645 388 Pfam PQ loop repeat 274 332 IPR006603 -
Vra11g0645 388 Pfam PQ loop repeat 32 88 IPR006603 -
Vra11g0645 388 MobiDBLite consensus disorder prediction 131 158 - -
Vra11g0645 388 MobiDBLite consensus disorder prediction 194 210 - -
Vra11g0645 388 PANTHER PQ-LOOP REPEAT FAMILY PROTEIN / TRANSMEMBRANE FAMILY PROTEIN 3 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0645 Vra-Chr11 5161365 5164956 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0645 K23678 - gmx:100815310 646.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0645 11 5161365 5164956 Vra11g0645 11 5161365 5164956 ECH
Vra11g0645 11 5161365 5164956 Vra7g1082 7 26437254 26441063 PCT