Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0416 ATGACCGCCTCTCAACTCATCTCCGTTAGTCCCGACGAACTCCGCTTCCACTTTGAGTTGGAGAAGCAGACGTTTTGCGATCTTAAGGTCCTCAATAACACACAGAATCATGTTGCTTTCAAGGTCAAAACCACTTCTCCCAAGAAATACTTTGTACGACCTAACACCGGTGTCGTACACCCCTGGGACTCCTGTATCATCAGAGTCACCCTCCAAGCCCAACGGGAATACCCTCCAGACATGCAATGTAAAGACAAGTTTCTCTTACAGAGTACAATAGTGAGTCCAAATACTGATGTTGACGACCTCCCACCAGATACTTTTAATAAGGAAAGTGGTAATTCAATAGAGGAGTTGAAATTAAGAGTTGCATATATCTCTACTGGCTCACCCGAAGGAAGCTCTGAAGATGATGCATCAAGGAGCTCACATAAACTCGATTCCTCTTCTAGTCAGGTTTTACAGAATCTGAAGGAAGAAAGAGATGCCGCTGTCAGACAAACGAGACAGCTGCAACAGGAACTGGACATGCTGAAAAGACGAAGAAACAGAAAAAGTGATCCTGGCTTTTCCTTCATCTTTGCCATTTTTGTGGGTGTCCTTGGAGTTTTACTTGGCTTTCTTTTTAAACTCTTATTCTCTTCTCCATCTAGAGAATGA 660 0.4348 MTASQLISVSPDELRFHFELEKQTFCDLKVLNNTQNHVAFKVKTTSPKKYFVRPNTGVVHPWDSCIIRVTLQAQREYPPDMQCKDKFLLQSTIVSPNTDVDDLPPDTFNKESGNSIEELKLRVAYISTGSPEGSSEDDASRSSHKLDSSSSQVLQNLKEERDAAVRQTRQLQQELDMLKRRRNRKSDPGFSFIFAIFVGVLGVLLGFLFKLLFSSPSRE* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0416 219 ProSiteProfiles Major sperm protein (MSP) domain profile. 6 126 IPR000535 -
Vra11g0416 219 MobiDBLite consensus disorder prediction 128 154 - -
Vra11g0416 219 Pfam MSP (Major sperm protein) domain 7 104 IPR000535 -
Vra11g0416 219 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 3 216 IPR016763 GO:0005789
Vra11g0416 219 Coils Coil 154 181 - -
Vra11g0416 219 Gene3D Immunoglobulins 2 128 IPR013783 -
Vra11g0416 219 PANTHER VESICLE-ASSOCIATED PROTEIN 2-1 3 216 - -
Vra11g0416 219 PIRSF VAMP_assoc_prot 1 152 IPR016763 GO:0005789
Vra11g0416 219 PIRSF VAMP_assoc_prot 127 211 IPR016763 GO:0005789
Vra11g0416 219 SUPERFAMILY PapD-like 3 134 IPR008962 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0416 Vra-Chr11 3017700 3021624 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0416 - - gmx:100794270 359.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1385 7 30972016 30975125 Vra11g0416 11 3017700 3021624 PCT