Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0279 ATGGGTTCCCTCAATCTGAAATGGGCTTCAGGGTGCTTGGCTTTGTGGAAGGTAGATTCAAGTAAAGCTACTCTGAGAGGTAGTTATGGGAATGATCAGTTCAAGCGTAAAGAGAAAGGAGGAGCAAGATGCAAAGGAGGTCAAAGATCTGTGATTGTTGCTACGGGACCAGCCATAGACCACGCTCCTGCTATTTCCCAAGAGCCCTTGACAAAAGATCATCTTATTCACTACATGGCATCTGGTTGCAAGCCCAAACAAAACTGGAGAATAGGTACAGAGCACGAGAAGTTTGGTTTTGAGCGTAAAACTTTACGTTCTATTAATTACGAACAATTATCAGCTTTACTCAATGGCATTGCTGAGAGGTTTGATTGGGAAAAAATAATGGAAGGTGAAAACATCATAGGACTAAAAAATGACAAGCAAAACATATCATTAGAGCGTGGTGGTCAGCTTGAGCTCAGTGGTGCGCCTTTGAAAACATTGCATCAAACTTGTGATGAGATTAATTCACATCTCTATCAGGCTAAAACTGTAGCAGATGAAATGGGAATTGATTTTATGGGATTAGGTTATCAGCCTAAATGGAGATTGGAAGAGATAGTTAGAGTGCCTAAGGAACGGTATAACATTTTACAGAACCAGTTATGCAAATTTGGCTCGCCTGGAGTTGAAATATTGATCATGACATGCTCAGTTCAGGTCAACCTGGACTTCAGTTCCGAAGCAGACATGATCAAGAAAATGCGTGCCGGAATTGCTTTGCAGCCATTAGCAGCAGCCTTATTTGCAAATTCACCTTTCAAGGAAGGGGTTCCAAGCTCTTATCTCACCACAAGAGGCCACATTGGTGAGTTTGACAAACATCGCACTGGCATACTCCCCTTTGTTTTTTATGACAATTTTGGGTTTGAGCAGTACGTTGATTACGCTCTTGATGTGCCGATGGTGTTTGTTTATCGAGAAAACAAGTACATTGACTGTCGTGATATGTCATTCCGGGACTTCATCGCAGGTAAACTCCCTGCCATTCCAGGTGAAGTGCCAACACTAGCTGACTGGGAAAATCATCTGACAACCATATTCCCTGAGGTCAGGCTAAAGAGATACATGGAAATGAGAGGTGCTGATAATGGCCCTCCTGACATGATATGCGCTGTCCCTGCTTTTTGGGTAGGCTTACTGTACGATGAGGTTTCGCTACAAAATGCTGTAGATATGATTGCCGATTGGACCCCTGAAGACATACAGAATTTAAGGGATATGGCTCCCATAACTGGATTAAGGACTCAAGTTCGAGGTAGATTGCTGAGACATATTGCAGAAGATGTGTTGAAGTGGGCAAAGGAAGGGTTGGACAGAAGATGCTTGAGTGAATCCGTTTTCTTGGATCCATTGAAGGAAGTGGTTGAGACAGGTTTGACACAAGCAGACAAGCTGTTGGACTTGTATAATAACAAGTGGGAAAACAACATAGATCATGTGTTCAGAGAATGCTGCTACTAA 1509 0.4274 MGSLNLKWASGCLALWKVDSSKATLRGSYGNDQFKRKEKGGARCKGGQRSVIVATGPAIDHAPAISQEPLTKDHLIHYMASGCKPKQNWRIGTEHEKFGFERKTLRSINYEQLSALLNGIAERFDWEKIMEGENIIGLKNDKQNISLERGGQLELSGAPLKTLHQTCDEINSHLYQAKTVADEMGIDFMGLGYQPKWRLEEIVRVPKERYNILQNQLCKFGSPGVEILIMTCSVQVNLDFSSEADMIKKMRAGIALQPLAAALFANSPFKEGVPSSYLTTRGHIGEFDKHRTGILPFVFYDNFGFEQYVDYALDVPMVFVYRENKYIDCRDMSFRDFIAGKLPAIPGEVPTLADWENHLTTIFPEVRLKRYMEMRGADNGPPDMICAVPAFWVGLLYDEVSLQNAVDMIADWTPEDIQNLRDMAPITGLRTQVRGRLLRHIAEDVLKWAKEGLDRRCLSESVFLDPLKEVVETGLTQADKLLDLYNNKWENNIDHVFRECCY* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0279 502 PANTHER GAMMA GLUTAMYL CYSTEINE SYNTHETASE 79 502 - -
Vra11g0279 502 PIRSF GCL 57 502 IPR035434 GO:0004357|GO:0006750
Vra11g0279 502 Gene3D - 55 502 - -
Vra11g0279 502 TIGRFAM glu_cys_lig_pln: glutamate--cysteine ligase 69 502 IPR011556 GO:0004357|GO:0006750
Vra11g0279 502 Pfam Glutamate-cysteine ligase family 2(GCS2) 121 412 IPR006336 GO:0004357|GO:0042398
Vra11g0279 502 SUPERFAMILY Glutamine synthetase/guanido kinase 81 490 IPR014746 GO:0003824
Vra11g0279 502 PANTHER GLUTAMATE--CYSTEINE LIGASE, CHLOROPLASTIC 79 502 IPR035434 GO:0004357|GO:0006750
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0279 Vra-Chr11 1970455 1973945 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0279 K01919 - gmx:100775188 792.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0279 11 1970455 1973945 Vra11g0279 11 1970455 1973945 ECH
Vra11g0279 11 1970455 1973945 Vra7g3504 7 54325431 54333060 PCT