Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1430 ATGGCAGTGCAGTATGAGTGCTGTGATGTGGAGTTTTCAAAACGCGTACTGATAATTGTGCTGCTCGTGATGTTCGCTGGATTGATGTCAGGGCTCACTTTAGGCCTCATGTCATTGAGTCTCGTTGATCTTGAGGTCCTTGCAAAGTCTGGAACCCCTCACGATCGCAACAATGCTGCAAGGATATTGCCTGTGGTCAGGAATCAACATTTGTTGCTTTGCACACTCCTAATTTGCAATGCGGTAGCCATGGAGGCCCTTCCAGTTTTTCTGGATAGTCTTGTTGTTTGGTGGGGTGCTATACTGATTTCAGTGACATTAATTCTTCTGTTCGGTGAGATTATACCCCAATCAATTTGTTCTCGGTATGGTTTAGCAATTGGTGCAACAGTGGCTCCAGCAGTTCGTGTTCTTGTATGGATATGTTTTCCTGTTGCTTATCCAATTAGTAAGTTGCTGGACTTTTTGCTGGGGCATCGACATGAAGCCCTTTTCCACAGAGCTGAGCTGAAGACACTTGTAAATCTGCATGGCCATGAGGCTGGAAAAGGTGGGGAACTGACACATCATGAAACAACGATCATTGCTGGAGCACTTGAACTCTCTGAGAAGATAGCCAGTGATGTCATGACTCTCATAACCGAAACATTTTGTGTTGACATTAATTCAAAGCTTGATAGGTATCTGATGAATCTGATAATGGAGAATGGGCATAGCAGAGTCCCAGTCTATTATGAGCAGCCTACAAATATTATTGGACTTATCCTGGTCAAGAATTTATTGACAATTGACCCAGAAGATGAAGCACCAGTGAAAAGTGTGACCTTACGAAGAATTCCAAGGGTTCCAGAATCGATGCCTCTGTATGATATTTTGAATGAGTTCCAAATGGGTCATAGCCACATGGCTGTCGTTGTTAAAAACTGGGACAAGACTGAGCAACAACCTTCCAACAATAGTGCCTACGTGAGAGATGTGAAGGTGAATATTGACGGTGATAAGCCTCCCCAAGAGAATAGTCTAAGAGCTAAATCGTCACACCATAAATGGAAAAGCTTTTCAAGCTCAAATAATTCGAAGAGGGATAGTTCCCAGAGCAGAAAATGGTCCAAAAATATGTACTGCGATATTTTGGATATAGATGGAAATTCACTTCAAAAGCTGCCGGAAAAAGAAGAAGCTGTTGGAATAATTACAATGGAAGATGTCATCGAAGAGCTTTTACAGGAAGAGATCTTTGATGAGACGGATCATCATTTTGAAGACTTCTGA 1272 0.423 MAVQYECCDVEFSKRVLIIVLLVMFAGLMSGLTLGLMSLSLVDLEVLAKSGTPHDRNNAARILPVVRNQHLLLCTLLICNAVAMEALPVFLDSLVVWWGAILISVTLILLFGEIIPQSICSRYGLAIGATVAPAVRVLVWICFPVAYPISKLLDFLLGHRHEALFHRAELKTLVNLHGHEAGKGGELTHHETTIIAGALELSEKIASDVMTLITETFCVDINSKLDRYLMNLIMENGHSRVPVYYEQPTNIIGLILVKNLLTIDPEDEAPVKSVTLRRIPRVPESMPLYDILNEFQMGHSHMAVVVKNWDKTEQQPSNNSAYVRDVKVNIDGDKPPQENSLRAKSSHHKWKSFSSSNNSKRDSSQSRKWSKNMYCDILDIDGNSLQKLPEKEEAVGIITMEDVIEELLQEEIFDETDHHFEDF* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1430 423 CDD CBS_pair_CorC_HlyC_assoc 206 306 IPR044751 -
Vra10g1430 423 PANTHER AND COBALT EFFLUX PROTEIN CORC, PUTATIVE-RELATED 1 422 - -
Vra10g1430 423 SUPERFAMILY CBS-domain pair 194 409 IPR046342 -
Vra10g1430 423 MobiDBLite consensus disorder prediction 350 367 - -
Vra10g1430 423 PANTHER ANCIENT CONSERVED DOMAIN PROTEIN-RELATED 1 422 IPR045095 GO:0010960
Vra10g1430 423 MobiDBLite consensus disorder prediction 315 367 - -
Vra10g1430 423 Gene3D - 353 415 IPR046342 -
Vra10g1430 423 ProSiteProfiles CNNM transmembrane domain profile. 8 191 IPR002550 -
Vra10g1430 423 Pfam Cyclin M transmembrane N-terminal domain 17 185 IPR002550 -
Vra10g1430 423 Gene3D - 191 323 IPR046342 -
Vra10g1430 423 MobiDBLite consensus disorder prediction 327 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1430 Vra-Chr10 19385768 19388936 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1430 K16302 - gmx:100799797 682.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1575 7 34053351 34058870 Vra10g1430 10 19385768 19388936 PCT