Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0744 ATGGTGCTGCTTTCCCCAATTCCAATAAGGACTGAGAAGATTTTACCCATTAAACTTCCTGTTGTGGACTTATCCACAGAAAGATCAATGCTAACAAAACTCATAGTCAAAGCCTGTGAGGAGTACGGTTTCTTCAACGTCATCAACCATGGCGTTTCTTATGACACTGTAGCAAAAATGGAAGAAGCGGCTTTTGATTTCTTCGCCAGACCACTGCCCCAAAAGAAACAACTTCCCATTTATGGCTGCAAGAACATAGGCTTCAATGGAGACATGGGTGAGATTGAGTACCTTCTCCTCAGTGCTTCTCCTACCTCCATTGCTCACTTCAACAACATCTCCAACGTCCCCTCAAACTTCAGCTGTAGTGTGAGTGCATACAGAGATGGAGTTCGGGAGCTGGCATGTGAGATTTTGGAGCTAATGGCAGAGGGTCTGGGGGTTCCGGATAGATGGTTTTTGAGCAGGTTGATCAGGGATGTTGATAGTGACTCAGTGCTGAGGTTCAATCACTACCCAGCTACACTTAACAAAAACTGCAAGGATAAGGACATGTCTCCCTCTCACACCAACACCAATGTTGGCTTTGGGGAGCATTCTGACCCTCAGATTCTCACCATCCTCAGATCCAACGACGTCGCTGGCCTCCAAATCTCTCTTCAAGATGGGGTGTGGAACCCAGTTCCTCCTGACCCCTCAGCTTTCTGTGTTAATGTGGGTGATCTCTTGCAGGTTATGACAAATGGAAGATTTGTGAGCGTGAGACACAGGGCTGTGACAAACTCACACAAGTCTAGAATGTCGGTGGCTTATTTTGGGGGTCCACCACTTGATGCATGCATTGTTGCTCCCTCAGTTATGGTTACACCTCAGAGGCCCTCCCTCTTCAAACCCTTCACTTGGGCTGAATACAAGAAAGTCACCTACTCAATGAGGCTGGGAGAACGCCGCATTGACCTTTTCAGGAACTGCACGCAACTCCACACTCAAAACTACACTTCCTAA 1005 0.4726 MVLLSPIPIRTEKILPIKLPVVDLSTERSMLTKLIVKACEEYGFFNVINHGVSYDTVAKMEEAAFDFFARPLPQKKQLPIYGCKNIGFNGDMGEIEYLLLSASPTSIAHFNNISNVPSNFSCSVSAYRDGVRELACEILELMAEGLGVPDRWFLSRLIRDVDSDSVLRFNHYPATLNKNCKDKDMSPSHTNTNVGFGEHSDPQILTILRSNDVAGLQISLQDGVWNPVPPDPSAFCVNVGDLLQVMTNGRFVSVRHRAVTNSHKSRMSVAYFGGPPLDACIVAPSVMVTPQRPSLFKPFTWAEYKKVTYSMRLGERRIDLFRNCTQLHTQNYTS* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0744 334 Pfam 2OG-Fe(II) oxygenase superfamily 166 273 IPR044861 -
Vra10g0744 334 SUPERFAMILY Clavaminate synthase-like 13 314 - -
Vra10g0744 334 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 3 323 - -
Vra10g0744 334 PANTHER PLANT GIBBERELLIN 2-OXIDASE 3 323 - -
Vra10g0744 334 Pfam non-haem dioxygenase in morphine synthesis N-terminal 19 81 IPR026992 -
Vra10g0744 334 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 162 275 IPR005123 -
Vra10g0744 334 Gene3D - 6 312 IPR027443 -
Vra10g0744 334 PRINTS Isopenicillin N synthase signature 35 52 - -
Vra10g0744 334 PRINTS Isopenicillin N synthase signature 199 220 - -
Vra10g0744 334 PRINTS Isopenicillin N synthase signature 235 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0744 Vra-Chr10 13531038 13536153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0744 7 322 Glycosyltransferase AT5G59530 27.219 1.94e-28 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0744 K04125 - gmx:100811043 538.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0744 10 13531038 13536153 Vra10g0744 10 13531038 13536153 ECH
Vra7g2743 7 47725280 47727942 Vra10g0744 10 13531038 13536153 PCT