Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04488 ATGGCAGAAACAACAAAAAGGTATGCAGTTGTTACAGGGGCAAACAAAGGAATAGGATTTGCAGTATGCAAACAATTGGCTTCTATAGGGATCACTGTTGTGCTTACTGCAAGAGATGAAAATAGAGGTCTTGAAGCTGTTGAGAAATTGAAGCAGCTTTCTCTTCCTGGCCTTGTGGTTTTTCATCAACTTGATGTCACAGATCATGCAAGTATAACATCATTTGCAGATTTTATCAAGAATCAATTTGGAAAACTTGATATTTTGGAAAATGGTGGCCAGATTGATTGGAGCAAAATAATAATCGAAAACTATGAACAAACTGAAGCAGGTATTAAAACAAACTACTATGGAGCCAAGGAATTAACCGAAGCACTTATTCCCTTTCTACAACTTTCAACTTCACCCATAATTGTCAATGTTTCCTCATTCATGGGAAGCTTAGAGAATATTCCAAATGGATGGCCTAAGGAAGTACTCGGTGATGTTGAAAACCTTAATGAAAAAAAGATTGATGATTTTTTGAATCAATTTCTAAAGGATTTTGAAGAAGGTTCAATAGTAGAAAGCAAAGGATGGCCTATAAATATGTCTACATACGTTATCTCGAAAGCTGCTCTAAGTGCGTACACAAGAGTTCTGGCTAAAAAGTATTCATCAATATGCATCAATGCTGTTTGTCCGGGCTATGTGAAAACAGATATAAACTACAATACAGGTTATTTAACACCTGATGAAGGTGCTGAACCGATTGTGAGATTGGCATTGTTACCAGATGGAAGTCCTTCTGGGCTCTTTTTTGTTAGAAATGAAGAGAAACCATTTTGA 828 0.3635 MAETTKRYAVVTGANKGIGFAVCKQLASIGITVVLTARDENRGLEAVEKLKQLSLPGLVVFHQLDVTDHASITSFADFIKNQFGKLDILENGGQIDWSKIIIENYEQTEAGIKTNYYGAKELTEALIPFLQLSTSPIIVNVSSFMGSLENIPNGWPKEVLGDVENLNEKKIDDFLNQFLKDFEEGSIVESKGWPINMSTYVISKAALSAYTRVLAKKYSSICINAVCPGYVKTDINYNTGYLTPDEGAEPIVRLALLPDGSPSGLFFVRNEEKPF 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04488 275 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 261 IPR036291 -
Vivi7g04488 275 PRINTS Glucose/ribitol dehydrogenase family signature 200 219 IPR002347 -
Vivi7g04488 275 PRINTS Glucose/ribitol dehydrogenase family signature 219 236 IPR002347 -
Vivi7g04488 275 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Vivi7g04488 275 PRINTS Glucose/ribitol dehydrogenase family signature 84 95 IPR002347 -
Vivi7g04488 275 CDD carb_red_PTCR-like_SDR_c 7 275 IPR045313 GO:0016616
Vivi7g04488 275 Pfam short chain dehydrogenase 8 148 IPR002347 -
Vivi7g04488 275 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 187 215 IPR020904 GO:0016491
Vivi7g04488 275 Pfam Enoyl-(Acyl carrier protein) reductase 186 238 - -
Vivi7g04488 275 Gene3D - 2 275 - -
Vivi7g04488 275 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 IPR002347 -
Vivi7g04488 275 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 IPR002347 -
Vivi7g04488 275 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 200 219 IPR002347 -
Vivi7g04488 275 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 7 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04488 Vivi-Chr7 115398528 115400942 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04488 9 271 Miscellaneous Gene Families AT2G29150 26.199 1.14e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04488 K15095 K26488 gmx:100803877 407.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g04488 7 115398528 115400942 Vivi7g04488 7 115398528 115400942 ECH
Vivi7g04484 7 115385796 115387688 Vivi7g04488 7 115398528 115400942 PCT