Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g03848 ATGGCACAACGTACTCATGTACCAAAATTCGGCAATTGGGAGGGTAGTGACAATGTTCCTTACACGGCATATTTCGACAAAGCTCGAAAAGGTCGGACTGGCTCAAAGATGATAAACCCAAATGACCCCGAGGAAAATCCTGATTTAGTTTTTGATAATTCATCATCCGAACAACCACCTTCGTCCAAATCCAAACCCAAAGTCGATTCAGATGATCTATACGGAAAAGGATCAGCGCGAGCAACAATTGAGACACGTAAGAGTCTCGAAGATGGTGATCCTAAGCAATATGCTGACTCTCCAGCTCGTCATGACAATGTAGGTAACCGGAGTTCCAATGACTCTACACCTCGTCTTGGAGTAGGTTCTGCTGATAACCGACGAAGACCTTCAAGACAAAGTACTGCTGGGTCTGAATACAGCGTTGAACGTTCACCCCTTCATCGTCAGGCTAGAGCTCCGGGAAAAGACAATCCTTCGTTGGAAACAAAGAATTCTTACGACAGCAGTCACGGTACACCAGGAAGATCTCGGTTAAGACCAGTTAATCGAGGAGACGAAACTCCTGAGAAAGGCGCGGCTGTTCCAAAATTCGGTGAATGGGATGTGAGTAACCCTGCATCAGCAGAGGGCTATACTCACATTTTCAACAAGGTGAGGGCAGAGAGACAGGGTGGGCCCGGACATGCATCCGGCACACCTAATGAGAGGCCGCATGTTATCCGTAACCAACCTTCCGATGGCAAAGTCCAGTGTTGCTGCTTTGCTTGGGGAAGAAAATGA 783 0.4751 MAQRTHVPKFGNWEGSDNVPYTAYFDKARKGRTGSKMINPNDPEENPDLVFDNSSSEQPPSSKSKPKVDSDDLYGKGSARATIETRKSLEDGDPKQYADSPARHDNVGNRSSNDSTPRLGVGSADNRRRPSRQSTAGSEYSVERSPLHRQARAPGKDNPSLETKNSYDSSHGTPGRSRLRPVNRGDETPEKGAAVPKFGEWDVSNPASAEGYTHIFNKVRAERQGGPGHASGTPNERPHVIRNQPSDGKVQCCCFAWGRK 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g03848 260 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 189 224 IPR008700 -
Vivi7g03848 260 MobiDBLite consensus disorder prediction 105 120 - -
Vivi7g03848 260 MobiDBLite consensus disorder prediction 214 246 - -
Vivi7g03848 260 MobiDBLite consensus disorder prediction 1 20 - -
Vivi7g03848 260 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 6 246 IPR040387 -
Vivi7g03848 260 MobiDBLite consensus disorder prediction 30 202 - -
Vivi7g03848 260 MobiDBLite consensus disorder prediction 127 141 - -
Vivi7g03848 260 MobiDBLite consensus disorder prediction 48 63 - -
Vivi7g03848 260 MobiDBLite consensus disorder prediction 159 173 - -
Vivi7g03848 260 MobiDBLite consensus disorder prediction 83 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g03848 Vivi-Chr7 104489608 104492030 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g03848 K13456 - gmx:100808509 360.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g01637 6 74479558 74482827 Vivi7g03848 7 104489608 104492030 PCT