Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g03781 ATGCTTTCCTTTTCACTCTCTCCATTCCCTTCAACCCAATCACCATCACTCCACAAACCACCACCACCACCAACAAATCCAATTCTTCGCCTTAACCCACCACAACACCGATTGAATTTCCAACAAAGCGCTTCTTCTAGCTCTAGGGACAACAATAAAGCTGAAGACTTTCCAATAGAAAATGCTAATACTAGAGTAAACCCAGTTGAGGGTAGTGATGATAGGGTTTTATTTGGAAGAAAGAAGAAAAAGGGTAAGGAGAAAGTTTACTGGGTTTGTAGTGATTGTGGGTACACTACTGGACAATGGTGGGGTGTGTGTCGATCATGCAGTGTTTCTGGTACTATGAAAGAGTTTCATGAAGCGAAAAGTAGTGATAGTAATGGTAAGGTTAGTGGGTTTTCGGTTATGGAGAATGGTTTGGGGTCTTGGCTTCCTCAGCAGAGTGGTGAGTTAAGGCCTTTGAGATTGTCTGAGGTTAATAGAGGACTTGATCATTTGCATTGGAGAATTCCTTTGTCTGGTCTTTTTGGAAATGAAGTTTCCAGAGTGCTTGGTGGTGGCCTTGTACCAGGCTCATTGACTTTAGTTGGCGGGGATCCTGGTGTTGGGAAGAGTACTCTGTTGCTGCAGCTTGCTGCACTAATTGCGGAAGGCGACAAAGACGGTGAAGCATCTCCAGTTGTGTATGTCTCTGGTGAAGAGAGCATTGAGCAAATTGGTAACAGAGCTGACCGCCTAACAATTGGATCAGATATTTATTTATATTCAAGTAATGATATTGAGGACATATTGAAGAAAGTTCATCATCTCTCTCCTCGGGCTCTAGTTGTTGATTCTGTACAAACTGTTTATTTGAAAGGAATAATGGGGAGTCCTGGAGGGATTATGCAGGTGAAGGAGTGCACTTCGGCCTTACTACGATTTGCAAAGACGACAAACATACCAGTTCTATTGATTGGACATGTGACAAAATCTGGAGACATAGCAGGACCCCGTGTCTTAGAGCATATCGTTGATGTTGTTTTGTATATGGAAGGCGAGAAGTACACTTCCCATCGTATGCTTAGAGCTGTGAAAAATCGTTTTGGATCCACTGATGAGCTTGGAGTTTTTGAGATGTCACATTTGGGACTTGAGGCTGTTTCAAATGCCAGTGAAATGTTTCTTAGTGAACAAGACCTAGATTCAGATATTTTAGCCGGACTAGCTGTAGCTGTAATAATGGATGGGTCCAGAACGTTTCTTATTGAAATTCAGGCACTTTGTCTTTCTGGTTCGACAGGATCGAGGCAATTTAATGGTATCCAAGCAAATAGAGCTGATATGATCATATCTGTTCTTATCAAGCAAGCAGGACTCCGTCTCCAAGAACATGCTGTGTTTTTAAATGTTGTTAGTGGATTGACACTGAGCGAGACTGCAGGAGATCTTGCAATAGCAGCTGCAATTTGCAGCAGTTGCCTGGAACTTCCAATTCCAAATGACATTGCATTCATCGGTGAAATAGGTCTTGGTGGCGAGCTTCGCATGGTTGGTAGAATGGAAAAAAGGGTACACACAGTGGCGAAATTGGGTTACAGAATGTGTATAGTACCAAAGGCAGCTGAAAAGGTTTTGGGAACCGAAGGTTTAGAAAATATTAAAGTTGTTGGTTGCAGGAATCTCAAAGATGTTATCAACACTATATTTCCCAATGTCATGAGAAGAAGCAACTGA 1719 0.4223 MLSFSLSPFPSTQSPSLHKPPPPPTNPILRLNPPQHRLNFQQSASSSSRDNNKAEDFPIENANTRVNPVEGSDDRVLFGRKKKKGKEKVYWVCSDCGYTTGQWWGVCRSCSVSGTMKEFHEAKSSDSNGKVSGFSVMENGLGSWLPQQSGELRPLRLSEVNRGLDHLHWRIPLSGLFGNEVSRVLGGGLVPGSLTLVGGDPGVGKSTLLLQLAALIAEGDKDGEASPVVYVSGEESIEQIGNRADRLTIGSDIYLYSSNDIEDILKKVHHLSPRALVVDSVQTVYLKGIMGSPGGIMQVKECTSALLRFAKTTNIPVLLIGHVTKSGDIAGPRVLEHIVDVVLYMEGEKYTSHRMLRAVKNRFGSTDELGVFEMSHLGLEAVSNASEMFLSEQDLDSDILAGLAVAVIMDGSRTFLIEIQALCLSGSTGSRQFNGIQANRADMIISVLIKQAGLRLQEHAVFLNVVSGLTLSETAGDLAIAAAICSSCLELPIPNDIAFIGEIGLGGELRMVGRMEKRVHTVAKLGYRMCIVPKAAEKVLGTEGLENIKVVGCRNLKDVINTIFPNVMRRSN 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g03781 572 NCBIfam DNA repair protein RadA 86 559 IPR004504 GO:0003684|GO:0005524|GO:0006281
Vivi7g03781 572 SMART AAA_5 191 349 IPR003593 GO:0016887
Vivi7g03781 572 Pfam Rubredoxin metal binding domain 91 118 IPR041166 -
Vivi7g03781 572 FunFam DNA repair protein RadA 174 380 - -
Vivi7g03781 572 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 374 IPR027417 -
Vivi7g03781 572 MobiDBLite consensus disorder prediction 1 71 - -
Vivi7g03781 572 Gene3D - 399 571 IPR014721 -
Vivi7g03781 572 FunFam DNA repair protein radA isogeny 398 567 - -
Vivi7g03781 572 PRINTS DNA repair protein radA signature 353 379 - -
Vivi7g03781 572 PRINTS DNA repair protein radA signature 279 303 - -
Vivi7g03781 572 PRINTS DNA repair protein radA signature 93 117 - -
Vivi7g03781 572 PRINTS DNA repair protein radA signature 183 211 - -
Vivi7g03781 572 PRINTS DNA repair protein radA signature 318 346 - -
Vivi7g03781 572 PRINTS DNA repair protein radA signature 428 451 - -
Vivi7g03781 572 MobiDBLite consensus disorder prediction 14 30 - -
Vivi7g03781 572 MobiDBLite consensus disorder prediction 35 52 - -
Vivi7g03781 572 SUPERFAMILY Ribosomal protein S5 domain 2-like 360 564 IPR020568 -
Vivi7g03781 572 Pfam Subunit ChlI of Mg-chelatase 445 535 - -
Vivi7g03781 572 PANTHER DNA REPAIR PROTEIN RADA 34 566 - -
Vivi7g03781 572 Pfam AAA domain 184 327 - -
Vivi7g03781 572 ProSiteProfiles RecA family profile 1. 170 323 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Vivi7g03781 572 Gene3D - 180 376 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g03781 Vivi-Chr7 103708415 103714621 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g03781 K04485 - gmx:100794165 845.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g03781 7 103708415 103714621 Vivi7g03781 7 103708415 103714621 ECH
Vivi2g07990 2 229873976 229887031 Vivi7g03781 7 103708415 103714621 PCT