Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g02888 ATGATCCTTATTAAGGCAATGTTGGTGTTCATCTTAGTTGTAAGATCATGTTCTTTGTGTGTTGGTGAAGTTGTAACATGTTCCAACATAGTGCCACTTAATCATCGTACAGACAACGTTTCTATAGTAGATTTTGGTGGTGTTGGTGATGGAAAAACCCTTAACACCAATGCGTTTAAAGATGCTGTTTACAAAATTAGCCAATTGGCACAAAGGGAAAGAGGGACTACCCTTTACATACCTCCGGGGGTATATTTGACAGAGTCGTTTAATCTGACTAGTCATATGACTCTTTATCTTGCTGCTGGTGCTGTTATCAAAGCCACACAGAATTCTTCAAACTGGCCTTTAATTGCACCATTGCCATCTTACGGAAGAGGAAGAGAGCGACCTGGAGGAAGGTATATAAGCTTTATCCATGGAGATGGACTTCAAGATGTCGTAATCACAGGTGAGAATGGGACAATTGATGGGCAAGGAGATGAATGGTGGAACATGTGGAGGAATAAAACTCTTCAATTTACCAGACCAGGTCTTGTTGAATTTGCAAATTCGAAAGATATTATTATTTCTAATGTCACCTTCAAGGATTCTCCCTTCTGGAACATACATCCAGTTTACTGCAGCAATGTTGTTGTTAGATTCGTCACAATTTTGGCTCCGCACGACTCTCCCAATACTGATGGCGTTGATCCAGATTCAAGTTCAAATGTCTGCATAGAAGACTCATACGTATCAAGCGGAGACGATATTGTGGCAGTGAAGAGTGGATGGGACGAATATGGAATTTCTTACGGCCGTCCTAGCTCTAACATCACCATCCGACGTGTCAATGGATCGTCTGCGTTTGCCGGGATTGCTGTCGGCAGCGAAGCTTCAGGAGGAGTTGAGAATGTACTTGCTGAACACATCAACCTTTACAACATGGGAATTGGTATACACATTAAGACGAATATCGGAAGGGGAGGGTATATACGGAATATAACATTGACTAATATTTATATAAAGAATGCAAGAACAGGTATAAAGATTTCAGGTAGTGTTGGTGACCATCCTGATGATAAATATGACCATAATGCCCTCCCAATTGTAAAGGGTATTAGAGTTGAGAATGTATGGGGTGTGAAGGTTTTGCAAGCTGGTCTTATACAAGGAATTAGAAATTCTCCTTTTACTGATATTTGTTTATCGGATATCAACCTTCGTGGAACGAATGAAACTAAAAGTAGAACTCCGTCTTGGAAGTGTTCGGAGGTGTCTGGAGTTGCTCATCAGGTTAGTCCATGGCCTTGTTCCGAGCTGATCAGCCACCAGTCAGGTTCATGTGCCGATTACACTAATGCTCCTAGATATTGA 1356 0.4137 MILIKAMLVFILVVRSCSLCVGEVVTCSNIVPLNHRTDNVSIVDFGGVGDGKTLNTNAFKDAVYKISQLAQRERGTTLYIPPGVYLTESFNLTSHMTLYLAAGAVIKATQNSSNWPLIAPLPSYGRGRERPGGRYISFIHGDGLQDVVITGENGTIDGQGDEWWNMWRNKTLQFTRPGLVEFANSKDIIISNVTFKDSPFWNIHPVYCSNVVVRFVTILAPHDSPNTDGVDPDSSSNVCIEDSYVSSGDDIVAVKSGWDEYGISYGRPSSNITIRRVNGSSAFAGIAVGSEASGGVENVLAEHINLYNMGIGIHIKTNIGRGGYIRNITLTNIYIKNARTGIKISGSVGDHPDDKYDHNALPIVKGIRVENVWGVKVLQAGLIQGIRNSPFTDICLSDINLRGTNETKSRTPSWKCSEVSGVAHQVSPWPCSELISHQSGSCADYTNAPRY 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g02888 451 SUPERFAMILY Pectin lyase-like 35 435 IPR011050 -
Vivi7g02888 451 Pfam Glycosyl hydrolases family 28 137 419 IPR000743 GO:0004650|GO:0005975
Vivi7g02888 451 Gene3D - 23 424 IPR012334 -
Vivi7g02888 451 PANTHER PECTIN LYASE-RELATED 30 439 - -
Vivi7g02888 451 SMART pbh1 235 267 IPR006626 -
Vivi7g02888 451 SMART pbh1 296 317 IPR006626 -
Vivi7g02888 451 SMART pbh1 208 234 IPR006626 -
Vivi7g02888 451 SMART pbh1 325 346 IPR006626 -
Vivi7g02888 451 SMART pbh1 269 290 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g02888 Vivi-Chr7 93092810 93096061 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g02888 4 434 Glycoside Hydrolase AT4G23820 68.910 0.0 628
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g02888 - - gmx:100818820 714.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g06073 3 150640067 150643185 Vivi7g02888 7 93092810 93096061 PCT