Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06073 ATGATGCATCTTCTCTTCCTTCTCACATTCCTCTTCTACTCCTCTCAAACCTCCGCATCCTACTCCCAAACATGCTCCGGCATAGTACCGTTCCGGCAGCGCACCGACACGATTTCTATAACCGACTTCGGCGGTGTCGGCGACGGAAAAACACTCAACACGAAAGCTTTCAGGGAAGCTATTTACCGGATCCAGCATATTAAGCGACGCGGCGGCACGCTCCTTTATGTGCCGCCGGGAGTGTACTTAACGGAAAGCTTCAATCTTACTAGTCATATGACTCTTTATCTTGCTGCTGGTGCTGTTATTAAAGCTACACAGAGGTTGTGGAATTGGCCTTTAATTGCACCTTTACCATCTTATGGAAGAGGAAGGGAGCTCCCCGGAGGAAGGTATATAAGTTTTATCCACGGCGATGGAGTTCGCGATGTAATAATCACAGGTGAGAATGGGACAATTGATGGGCAGGGAGATGTGTGGTGGAACATGTGGAGGCAGAGAACTCTTCAATTTACAAGACCAAACCTTGTTGAATTTTTGAATTCAAGAAATATTATTATTTCAAACGTGATTTTCAAGAATTCTCCCTTCTGGAATATTCATCCAGTTTACTGCAGCAATGTTGTTGTTCGATATGTCACAATTTTGGCTCCTCGTGACTCTCCTAACACTGATGGAATTGATCCAGATTCCAGTTCAAATGTTTGCATAGAGGACTCATACATATCAACAGGAGATGATCTTGTGGCTGTGAAGAGTGGATGGGACGAATACGGTATTTCGTATGGCCGCCCTAGCTCTGATATCACGATCCGGCGTATAACCGGATCATCTCCATTTGCCGGCATTGCTGTAGGCAGTGAAACATCAGGCGGAGTACGGAATGTACTCGCCGAACACATCAACCTCTTCAACATGGGAGTTGGTATCCACATTAAGACAAACATTGGAAGAGGAGGGATTATCAAGAATCTAACAATGTCTAGTGTGTATATCGAAAACGCAAGGACGGGAATAAAAATTTCTGGTGATGTAGGTGATCATCCAGATGAAAATTTCAACTCTAATGCTTTGCCAGTTGTGAAGGGAATCACAATTAAGAATGTTTGGGGTGTGCATGTTTTGCAAGCTGGTTTGATACATGGATTGAGTAATTCGCCTTTTACTGATATTTGTTTCTATGATATTAACCTTCATGGTGAGACTGGATCATCGGCTAGATCTTCTCCACCTTGGAAGTGTTCTGATGTTTCAGGATTTGCTCATCAGGTTAGTCCTTGGCCATGTTCTCAGCTAAGCAGCCAAGTGCCTGGATCATGTACCAATTACTAG 1332 0.4399 MMHLLFLLTFLFYSSQTSASYSQTCSGIVPFRQRTDTISITDFGGVGDGKTLNTKAFREAIYRIQHIKRRGGTLLYVPPGVYLTESFNLTSHMTLYLAAGAVIKATQRLWNWPLIAPLPSYGRGRELPGGRYISFIHGDGVRDVIITGENGTIDGQGDVWWNMWRQRTLQFTRPNLVEFLNSRNIIISNVIFKNSPFWNIHPVYCSNVVVRYVTILAPRDSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGISYGRPSSDITIRRITGSSPFAGIAVGSETSGGVRNVLAEHINLFNMGVGIHIKTNIGRGGIIKNLTMSSVYIENARTGIKISGDVGDHPDENFNSNALPVVKGITIKNVWGVHVLQAGLIHGLSNSPFTDICFYDINLHGETGSSARSSPPWKCSDVSGFAHQVSPWPCSQLSSQVPGSCTNY 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06073 443 SMART pbh1 232 264 IPR006626 -
Vivi3g06073 443 SMART pbh1 205 231 IPR006626 -
Vivi3g06073 443 SMART pbh1 293 314 IPR006626 -
Vivi3g06073 443 SMART pbh1 322 343 IPR006626 -
Vivi3g06073 443 SMART pbh1 356 376 IPR006626 -
Vivi3g06073 443 SMART pbh1 266 287 IPR006626 -
Vivi3g06073 443 SUPERFAMILY Pectin lyase-like 30 432 IPR011050 -
Vivi3g06073 443 Gene3D - 17 424 IPR012334 -
Vivi3g06073 443 Pfam Glycosyl hydrolases family 28 135 409 IPR000743 GO:0004650|GO:0005975
Vivi3g06073 443 PANTHER PECTIN LYASE-RELATED 5 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06073 Vivi-Chr3 150640067 150643185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06073 5 434 Glycoside Hydrolase AT4G23820 76.279 0.0 690
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06073 - - aprc:113856117 765.763
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g06073 3 150640067 150643185 Vivi3g06073 3 150640067 150643185 ECH
Vivi3g06073 3 150640067 150643185 Vivi7g02888 7 93092810 93096061 PCT