Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g02619 ATGGATATTTTAGATTGTGCAAGAATTATACTAGATAGAGTTCTGAAATTTGATCCTGAGAATGCTCGAAAGATAGTCGGTTATCTCCTTATGCAAAATCTCAGCGAACCAGAAATGGCTAGATTGGCATCTTGCCCGGACCATATCATGGTCGATGTCATACTTAACGTCAAAATTCAAATGTTCGCTGTAAATTCAGCCATGACTTCGACTCCGCCACCAAATGTAGCTCCTGCGCCCCAAGGTTTAGCCTATTTTCCGGGTTTCTCTTCGGCTTCACCACAACCCCCACCACCAACACCACGGAACTTTCAGGTTCCGTCTACCTATTGGGATCTACAGTCTGCGGCTGGCAATGAAAATCAAGAATTTATGGGAGTGAGTTATCTGGATTCGGTCACGGAACTTCAGAAACAAGCACAGATGTTGAGTTTGGAGAATCCTTTAGATCATGTGAATACCGGACCTAGAGGTGTTTTCGTCAATGATTACAACAACGGCTTTGATTCTTCTGCTGTCAATTTTGGCGGAAGATCTGCAAAAAGGTTTTCAAATTCGAACCCGTCTGAATTTCCGGTCAAGATCTGTCACTATTTCAGTAAAGGCCATTGTCGGCATGGAGGTAATTGTCGTTATTTTCATGGTCAAGTTCCTCATGAGAGTTTATCCTCTCAAATGCATATGAATGGAAATGGTGATAATACTTGTAACGAGGATCAGGTGATTTCGCCGCGTTCGTTAGCTCAGATAGAGGCTGAGATTATTGAGCTTCTTAAGCAGAAAAGAGGTACTCCAATGTCAATTGCTTCGCTGCCGATGGCATACTTTGAGAGATATAAAAAGGCATTGCAAGCTCAGGGCTATTTAACTGAGAGCCAGCGACATGGTAAGTCTGGTTATAGTTTGACAAGGCTTCTCGCGCGGCTGAATAGTATTCGGCTAATCGACAGACCTCATGGACAGCATTCGGTTATTTTGGCGGAAGATGCCCATAAATACATTCAAACTGGAGATTTAGTTCAGAATATCAGCGCTGCTCGACAACTATATCTGACTTTTCCAGCTGACAGCACTTTCTCCGAAGATGATGTCGCAAGCTATTTCAACGAAATTGGACCTGTTGACGATGTTAGGATTCCATGTCAACATAAAAGAATGTTTGGATTTGTAACATTTGCTCATCCCGAAACTGTTAGAATCATCTTGGAAAAGGGAAATCCCCATTTTGTTCGCGGCTCTCGGGTGCTTGTGAAACCCTACAAAGAGAACACAAGGAGATATCAAGATAGAGTGGATCACTTGCCTTGTTGTTCACGCTACTATACAAATGTGGATTCTGAACTTGACCTAATTCCAAGAGAACTCGGAAAACATAGATCGATAATGATGAGGAGGAGACAGATGATGGAAGAGGCGCAAGCTTTGGAATATCACAAGAGAAGTCTTGAGCAGCAGCAGCAGCTTTCTCAAAGAGTTTTGCCTGTTTCAGGTTTTCCCGGGGACGGGTTTAGAGTTCTAGATGATCGATTCCCTTTCCCGCCTGCAGAAGTTCTGAACGTAGCAAAGGTTGCAGAAACCGATTCCTCTGAAGGAAGCAATGAAGTACAAGTAAATCATATCCCGAAAGTACCCCAACTCCCGGACGAGTTTCCGATTGAAAATAATAATTAA 1671 0.4303 MDILDCARIILDRVLKFDPENARKIVGYLLMQNLSEPEMARLASCPDHIMVDVILNVKIQMFAVNSAMTSTPPPNVAPAPQGLAYFPGFSSASPQPPPPTPRNFQVPSTYWDLQSAAGNENQEFMGVSYLDSVTELQKQAQMLSLENPLDHVNTGPRGVFVNDYNNGFDSSAVNFGGRSAKRFSNSNPSEFPVKICHYFSKGHCRHGGNCRYFHGQVPHESLSSQMHMNGNGDNTCNEDQVISPRSLAQIEAEIIELLKQKRGTPMSIASLPMAYFERYKKALQAQGYLTESQRHGKSGYSLTRLLARLNSIRLIDRPHGQHSVILAEDAHKYIQTGDLVQNISAARQLYLTFPADSTFSEDDVASYFNEIGPVDDVRIPCQHKRMFGFVTFAHPETVRIILEKGNPHFVRGSRVLVKPYKENTRRYQDRVDHLPCCSRYYTNVDSELDLIPRELGKHRSIMMRRRQMMEEAQALEYHKRSLEQQQQLSQRVLPVSGFPGDGFRVLDDRFPFPPAEVLNVAKVAETDSSEGSNEVQVNHIPKVPQLPDEFPIENNN 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g02619 556 Pfam OST-HTH/LOTUS domain 246 324 IPR025605 -
Vivi7g02619 556 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 359 414 IPR000504 GO:0003723
Vivi7g02619 556 ProSiteProfiles OST-type HTH domain profile. 246 328 IPR025605 -
Vivi7g02619 556 Gene3D - 162 225 - -
Vivi7g02619 556 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 347 422 IPR000504 GO:0003723
Vivi7g02619 556 SMART rrm1_1 348 418 IPR000504 GO:0003723
Vivi7g02619 556 Coils Coil 465 485 - -
Vivi7g02619 556 ProSiteProfiles Zinc finger C3H1-type profile. 190 217 IPR000571 GO:0046872
Vivi7g02619 556 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 542 - -
Vivi7g02619 556 FunFam zinc finger CCCH domain-containing protein 53-like isoform X2 354 425 - -
Vivi7g02619 556 MobiDBLite consensus disorder prediction 527 556 - -
Vivi7g02619 556 Gene3D - 352 426 IPR012677 -
Vivi7g02619 556 SUPERFAMILY RNA-binding domain, RBD 358 429 IPR035979 GO:0003676
Vivi7g02619 556 SUPERFAMILY CCCH zinc finger 192 215 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g02619 Vivi-Chr7 89959174 89963213 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g02619 - - gmx:100818984 534.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g02619 7 89959174 89963213 Vivi7g02619 7 89959174 89963213 ECH
Vivi3g05381 3 110280700 110283896 Vivi7g02619 7 89959174 89963213 PCT