Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05381 ATGGAAATTTCTGAGAGTACGAGGATTCTTTTCGAGAAAATTCAAAGATATGAGCCGGAGTATGCTCTAAGGATCATTAGCAATCTCCTTAGACAACATGGAGAACAAGAGATTGCTTACTTAGCTTCATTGCCAGATCATGTGATCTATGAACTTTCTGTTAGAGCAAGGATTGGACTTGAAATGTTGGCTGCTCGATCGGCAATCTCGACCATGGGAAATCCTTCACCTGCAAGTTTCCAGGTTCAATCTCCCTTTTACAATATGCATGATGGAAATACTAGTTCAGATTTTACTTCGGTAGGTTATACGAATTCCATCACCGATTTGTTCGGTTCGGAGAATCATCGATATGTAGATAGTGTAATAAAGTCTACAACAGCTAACTTTAATCTCTATAATAATAATAATTACTACTTAGGTTATGTTTCAAGAGTTTCCGGTTTGAATAGAAAAAACGGTAAATTTCCATTCAAAACATGTTACTATTTCAGCAAAGGATTTTGTAGACATGGAAATAGTTGTAGGTTCTATCATAATGGACAAGCTGTTTCTGAGCTCTACGGAAACGACATTGCTGCCAACGACGATGATCAAGTGATTTCGCTCGGTTCACTGGCGAAACTAGAGTCGGAAATCGTTGAACTTTTGAAACAAAGAGGAAGCCCTATTTCAATTGCTTCACTTCCAATGGCATACTATGATAAGTACAAAAAGGCCTTACAGGCAGAAGGTTACCAAGCTGAGAGCCAGCGACATGGTAAGTCGGGCTGCAATTTGACGAGGCTGCTGATTCGATTGGGAAACAGCATTCGGCTAATCGACCGGCCTCATGGGCAGCATTCGGTGGTTTTGGCCGAAGATGCGGCGAAATTTATGGGAAGGGCAGACTGTCAACATATTAGTGCATCACAACAACTTTACTTGACATTTCCAGCTGACAGCACTTTCTCTGAAGATGATGTATCAAACTATTTCAGAACTTTTGGGTGCGTTATAGACGTAAGGATTCCGTGTCAGTCAGAAAGGATGTTTGGGTTTGTGACATTTGTTTATCCAGAAACTGTGAAAACAATTCTGGAGGAGGGTAATCCTCACTATGTTCGTGGATCGCGAGTTCTTGTGAAACCTTACAAGGAGAGGGCAAAACTTGTTGACAGGAAGTATCCACATCGATTCGAGCACCATGTTCGTCATTCACCGGAATATGTAGACTTCGATGCTGAAATCACTTCAAGTCCAATAGGTTGTGGAAATACTCGGTATCAGACAAGGCTTCAACTTGACGAGCAAAACCGAATCTTTGAATTGCAGAGAAGGCGTCTTGCAATGTTGCAAGTTGCCCAAAGATCTTTGTCTAGTCCACCGCATTTAAGCCTCGACACGAATGGATCAAGAGTTTCAGACGATAACCTCAATGTCCAGCTCCAGCCCACCGAATCTTTCAGTTATGCACGAAATGTCATAGCCGATAACTCTAACGAGGACAGGGAAGGAGTGCACCAACCTGAAACCGCATTTGCGTTTCGCATAGATACAGGAATTTCAGCAATCATGTAG 1560 0.4192 MEISESTRILFEKIQRYEPEYALRIISNLLRQHGEQEIAYLASLPDHVIYELSVRARIGLEMLAARSAISTMGNPSPASFQVQSPFYNMHDGNTSSDFTSVGYTNSITDLFGSENHRYVDSVIKSTTANFNLYNNNNYYLGYVSRVSGLNRKNGKFPFKTCYYFSKGFCRHGNSCRFYHNGQAVSELYGNDIAANDDDQVISLGSLAKLESEIVELLKQRGSPISIASLPMAYYDKYKKALQAEGYQAESQRHGKSGCNLTRLLIRLGNSIRLIDRPHGQHSVVLAEDAAKFMGRADCQHISASQQLYLTFPADSTFSEDDVSNYFRTFGCVIDVRIPCQSERMFGFVTFVYPETVKTILEEGNPHYVRGSRVLVKPYKERAKLVDRKYPHRFEHHVRHSPEYVDFDAEITSSPIGCGNTRYQTRLQLDEQNRIFELQRRRLAMLQVAQRSLSSPPHLSLDTNGSRVSDDNLNVQLQPTESFSYARNVIADNSNEDREGVHQPETAFAFRIDTGISAIM 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05381 519 SUPERFAMILY RNA-binding domain, RBD 316 400 IPR035979 GO:0003676
Vivi3g05381 519 CDD RRM_AtC3H46_like 307 376 IPR034365 -
Vivi3g05381 519 FunFam zinc finger CCCH domain-containing protein 53-like isoform X2 312 383 - -
Vivi3g05381 519 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 497 - -
Vivi3g05381 519 Pfam OST-HTH/LOTUS domain 205 283 IPR025605 -
Vivi3g05381 519 ProSiteProfiles OST-type HTH domain profile. 205 287 IPR025605 -
Vivi3g05381 519 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 305 380 IPR000504 GO:0003723
Vivi3g05381 519 ProSiteProfiles Zinc finger C3H1-type profile. 155 182 IPR000571 GO:0046872
Vivi3g05381 519 SMART rrm1_1 306 376 IPR000504 GO:0003723
Vivi3g05381 519 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 317 372 IPR000504 GO:0003723
Vivi3g05381 519 Gene3D - 312 383 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05381 Vivi-Chr3 110280700 110283896 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05381 - - vvo:131656528 1023.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g05381 3 110280700 110283896 Vivi3g05381 3 110280700 110283896 ECH
Vivi3g05381 3 110280700 110283896 Vivi7g02619 7 89959174 89963213 PCT