Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g02560 ATGTCGGCGGACCAGGGTAAGCCACTACCAAAGTTTGGCGAATGGGATGTCAATGATCCGGCTTCAGCTGAAGGTTACACTGTGATTTTTAACAAAGCCAGGGATGAGAAAAAGACTGGTGCCAAACCTGAGTCACCTGCAAGGGCAAACCCTCAAGCCAGGCCTCCATTAGAGAATGCCAAAACTCAAAGTAAAGGTTGGTTTTGCTGCATACATAATCCTCAAGCGGAATCATAG 237 0.4726 MSADQGKPLPKFGEWDVNDPASAEGYTVIFNKARDEKKTGAKPESPARANPQARPPLENAKTQSKGWFCCIHNPQAES 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g02560 78 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 4 69 IPR040387 -
Vivi7g02560 78 MobiDBLite consensus disorder prediction 32 66 - -
Vivi7g02560 78 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 4 39 IPR008700 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g02560 Vivi-Chr7 89530339 89532345 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g02560 - - lja:Lj2g3v3303460.1 133.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g02560 7 89530339 89532345 Vivi7g02560 7 89530339 89532345 ECH
Vivi3g05232 3 105667347 105670992 Vivi7g02560 7 89530339 89532345 PCT