Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05232 ATGTCGGAAAAGGGTCGTCCACTACCCAAATTCGGTGAATGGGATGTCAATGATCCAGCCTCAGCTGAGGGGTTCACAGTGATTTTTAACAAGGCAAGGGATGAGAAAAAGACAGGTGGCAATACCGAGTCACCTGGAAAGACCGCCACTGAACCTCAAAGCAAACCTGCATCCGATCCCGGCAAACCTCAGAGTAAAAAATGGTTTTGCTGCATACAAAACCCTCCTGCAGAGTCATAA 240 0.4792 MSEKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGNTESPGKTATEPQSKPASDPGKPQSKKWFCCIQNPPAES 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05232 79 MobiDBLite consensus disorder prediction 42 60 - -
Vivi3g05232 79 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 3 38 IPR008700 -
Vivi3g05232 79 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 3 70 IPR040387 -
Vivi3g05232 79 MobiDBLite consensus disorder prediction 1 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05232 Vivi-Chr3 105667347 105670992 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05232 - - gmx:100305826 154.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g05232 3 105667347 105670992 Vivi3g05232 3 105667347 105670992 ECH
Vivi3g05232 3 105667347 105670992 Vivi7g02560 7 89530339 89532345 PCT