Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05810 ATGGATAGTTTTTCTTCTGCTACTACTATACCTTTTGCTTTTCATGGAGCTAAAGATGACATCACCATGCAAATTTCTTTGATTTGGACTCAAATCAAAGCACCATTGATAGTTCCATTGCTAAGAATATCAGTGTTTTTGTGTTTGATAATGTCAGTGATGATGGTTATTGAGAGAGTTTATATGGGTATTATCATTACTCTTGTGAAACTATTTGGAAGAAAACCTGAAAAACGTTACAAATGGGAACCTATTAAGGATGATATTGAGTTGGGAAACTCTTGTTATCCAATGGTTCTTGTTCAAATCCCCATGTACAATGAAAGAGAGGTTTATCAATTGTCAATTGGTGCTGCATGTGGTCTTTCTTGGCCTTCTGATAGGATCATTATACAAGTTCTTGATGACTCCACTGACCCAATAATCAAGGAGTTGGTGCAAGTAGAATGCCAAAGATGGGCAAACAAAGGTGTGAACATAAAGTATGAAGTTAGAGACAATAGAAATGGATACAAAGCAGGTGCACTGAAAGAAGGAATGAAACATAGCTATGTGAAACAATGTGACTTTGTTGCAATATTTGATGCTGATTTTCAACCAGAGTCTAATTTCTTGTGGCGCACAGTCCCATTTTTGGTGCATAATCCTGAACTTGCCCTTATTCAAGCTCGTTGGAAATTCGTGAATGCAGATGAATGTTTAATGACCAGAATGCAAGAGATGTCACTAGATTACCATTTTACAGTTGAACAAGAAGTGGGCTCTTCCACTTATGCCTTTTTTGGCTTCAATGGGACTGCGGGAGTATGGAGAATTTCAGCTATGAATGAGGCTGGTGGATGGAAAGATAGAACCACAGTTGAGGATATGGACTTGGCTGTTCGAGCTAGTCTCAAAGGATGGAAATTCTTATATTTATCAAATCTGCAGGTGAAAAATGAATTGCCTAGTACTTTCAAAGCCTACCGATACCAGCAGCATCGTTGGTCGTGTGGACCAGCAAATCTTTTCAGAAAAATGGTCATGGAGATTATCAAAAATAAGAAAGTGACATTGTGGAAGAAGATACATGTAATTTACAACTTCTTCTTTGTTAGAAAAGTTGTAGCACACATCAATACGTTTATGTTTTATTGCATTATACTACCTGCAACAGTTTTAGTACCTGAAATTGTGGTTCCGAAATGGGGTGCTGTTTATATCCCTTCAATTATTACTCTTCTCAATGCTGTTGGAACTCCAAGGTCACTCCATTTACTTGTATTTTGGATTCTATTTGAGAATGTCATGTCTCTACATCGAACGAAAGCAACTATTGTTGGTCTATTAGAGACTAGTCGAGTGAATGAATGGATTGTCACTGAGAAGCTCGGAGACGCTCTCAAGGTTAAAGCTGGAACAAAAGCACTCAAGAAGCCTCGGTTCAGGATTGAAGACAGGATTCACTTGTTAGAACTCGGTGTTGGAATGTACCTCTTCTTTATCGGCTGCTACGATGTTATGTTCGGGAAAAACCACTTCTTCATCTTTCTCTTTATCCAAGCATTCGCCTTCTTCATCATGGCGTTTGGATATGTTGGAACCTTCATTCCCAACTCATAG 1602 0.3833 MDSFSSATTIPFAFHGAKDDITMQISLIWTQIKAPLIVPLLRISVFLCLIMSVMMVIERVYMGIIITLVKLFGRKPEKRYKWEPIKDDIELGNSCYPMVLVQIPMYNEREVYQLSIGAACGLSWPSDRIIIQVLDDSTDPIIKELVQVECQRWANKGVNIKYEVRDNRNGYKAGALKEGMKHSYVKQCDFVAIFDADFQPESNFLWRTVPFLVHNPELALIQARWKFVNADECLMTRMQEMSLDYHFTVEQEVGSSTYAFFGFNGTAGVWRISAMNEAGGWKDRTTVEDMDLAVRASLKGWKFLYLSNLQVKNELPSTFKAYRYQQHRWSCGPANLFRKMVMEIIKNKKVTLWKKIHVIYNFFFVRKVVAHINTFMFYCIILPATVLVPEIVVPKWGAVYIPSIITLLNAVGTPRSLHLLVFWILFENVMSLHRTKATIVGLLETSRVNEWIVTEKLGDALKVKAGTKALKKPRFRIEDRIHLLELGVGMYLFFIGCYDVMFGKNHFFIFLFIQAFAFFIMAFGYVGTFIPNS 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05810 533 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 90 315 IPR029044 -
Vivi6g05810 533 SUPERFAMILY Nucleotide-diphospho-sugar transferases 96 378 IPR029044 -
Vivi6g05810 533 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 20 528 - -
Vivi6g05810 533 FunFam Glucomannan 4-beta-mannosyltransferase 9 88 316 - -
Vivi6g05810 533 Pfam Glycosyl transferase family group 2 191 386 IPR001173 -
Vivi6g05810 533 CDD CESA_CaSu_A2 97 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05810 Vivi-Chr6 165390998 165395413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05810 1 532 Miscellaneous Gene Families AT5G03760 79.925 0.0 925
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05810 K13680 - gmx:100782772 989.564
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05810 6 165390998 165395413 Vivi6g05810 6 165390998 165395413 ECH
Vivi6g05810 6 165390998 165395413 Vivi1g07154 1 173964523 173969146 PCT