Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07154 ATGGATGCTTTTCAAGAGGCTAGATATGGACTTGGCTTACAGGTTGAGTTTGTTTGGAGGCAAATCAGAGAGCCATTGATCGTGCCAATACTGAGAGTTGCGGTGTTTCTGTGTCTTGGCATGTCATTGATGATGTTGGTTGAGAGAGTTTACATGGGTGTTGTGATTTGTTTTGTGAAGGTGTTTGGTAGAAAACCAGAGAAGCGTTATAAATGGGAGTCTTTTAAGGATGATGTTGAGTTGGGAAACTCTAACTATCCTATGGTTCTTGTTCAAGTTCCAATGTATAATGAAAGAGAGGTTTATCAGTTATCAATTGGTGCTGCATGTGGATTATCTTGGCCTTCTGATAGAATCATCATACAAATTCTAGATGATTCAACTGACCCAACAATCAAGGAGTTGGTACAGTTGGAATGCCGTAGATGGGGAAGCAAAGGAGTAAACATAAAGTACGAAGTTAGAGACAACAGAAATGGTTACAAAGCTGGTGCACTCAAAGAAGGAATGAAACATAGCTATGTCAAACAATGTGACTATGTTGCTATCTTTGATGCTGATTTTCAACCACAACCTGATTATCTTTGGCGAACCATCCCTTTCCTTGTTAGTAATTCTGATATTGCTCTTGTTCAAGCTCGCTGGAAGTTTGTGAATGCTGATGAATGTTTGATGACGAGGATGCAAGAGATGTCACTTGATTATCATTTTACTGTCGAACAAGAAGTGGGATCTTGCACTTACGCCTTCTTTGGCTTCAATGGGACTGCTGGTGTTTGGAGAATTTCGGCGTTGAATGAAGCTGGCGGGTGGAAAGATAGGACGACAGTGGAAGATATGGACCTAGCTGTACGGGCAAGTCTCAAAGGATGGAAGTTCTTATACCTCTCTAATTTACAGGTTAAAAACGAATTGCCGAGTACTTTAAAAGCGTATAGATACCAGCAGCATCGATGGTCATGTGGACCGGCCAATCTTTTCAGGAAAATGGTTATGGAGATTGTCACAAACAAGAAAGTGTCTCTGTGGAAGAAGATATATGTTATTTACAGTTTTTTCTTCGTTCGGAAGATTGTGGCGCACATAAACACATTTGTATTCTATTGTATTGTGTTACCTGCAACTGTTATGGTGCCGGAAGTTGTTGTCCCTAAATGGGGTGCTGTTTATATCCCTTCCATCATCACTCTTCTAAATGCGGTCGGAACTCCAAGGTCACTTCATTTACTCGTCTTTTGGATTCTCTTTGAGAATACCATGTCTCTACATCGAACAAAGGCAACACTTATCGGCCTACTAGAGGCTAGTAGAGTGAATGAATGGATTGTCACTGAAAAACTCGGAGATGCACACAAGGGTAAAGGTGGTGGTAAAGGACTCAAAAAATTCCGATTTAGGATCGGAGACAGGATTCACATGTTAGAACTTCTTGTTGGATTCTACCTCGTCTTCTGCGGCTGCTATGATCTTATGTATGGGAAAAATCACTTCTTCATATTCCTATACATCCAAGCAATTGCTTTCTTCGTTATGGCATTTGGATATCTTGGCACATTTGTTCCCAACTCATAG 1572 0.4071 MDAFQEARYGLGLQVEFVWRQIREPLIVPILRVAVFLCLGMSLMMLVERVYMGVVICFVKVFGRKPEKRYKWESFKDDVELGNSNYPMVLVQVPMYNEREVYQLSIGAACGLSWPSDRIIIQILDDSTDPTIKELVQLECRRWGSKGVNIKYEVRDNRNGYKAGALKEGMKHSYVKQCDYVAIFDADFQPQPDYLWRTIPFLVSNSDIALVQARWKFVNADECLMTRMQEMSLDYHFTVEQEVGSCTYAFFGFNGTAGVWRISALNEAGGWKDRTTVEDMDLAVRASLKGWKFLYLSNLQVKNELPSTLKAYRYQQHRWSCGPANLFRKMVMEIVTNKKVSLWKKIYVIYSFFFVRKIVAHINTFVFYCIVLPATVMVPEVVVPKWGAVYIPSIITLLNAVGTPRSLHLLVFWILFENTMSLHRTKATLIGLLEASRVNEWIVTEKLGDAHKGKGGGKGLKKFRFRIGDRIHMLELLVGFYLVFCGCYDLMYGKNHFFIFLYIQAIAFFVMAFGYLGTFVPNS 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07154 523 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 78 304 IPR029044 -
Vivi1g07154 523 Pfam Glycosyl transferase family group 2 180 379 IPR001173 -
Vivi1g07154 523 SUPERFAMILY Nucleotide-diphospho-sugar transferases 84 363 IPR029044 -
Vivi1g07154 523 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 15 518 - -
Vivi1g07154 523 CDD CESA_CaSu_A2 87 323 - -
Vivi1g07154 523 FunFam Glucomannan 4-beta-mannosyltransferase 9 78 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07154 Vivi-Chr1 173964523 173969146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07154 2 522 Miscellaneous Gene Families AT5G03760 77.586 0.0 873
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07154 K13680 - gmx:100782772 931.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g07154 1 173964523 173969146 Vivi1g07154 1 173964523 173969146 ECH
Vivi6g05810 6 165390998 165395413 Vivi1g07154 1 173964523 173969146 PCT