Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05506 ATGAGAGGACCAGTGGTGGTGAGTGGTGGATGCGGCAGTGGTGTGAAGGGGAGGAGAGGAGGGCGCGACGGCGGAGAAGAAGTGTCGCCGGCGGCGTTAATGTTGGCTGCTTTGAAGAAATCAATGGTGGCCTGTAGTGTGGAGAGTCCTGATGATGTGATTTCGACTGTTCATCATCCAATGGAGATTGGATGGCCTACAAACGTTAAACATGTTAGCCATGTTACGTTTGATAGGTTTAATGGTTTTTTAGGTCTTCCTCTTGAACTTGAGGTTCATGTTCCTGCTCCTGTTCCAAGTGCTAGTGTTAGTGTGTTTGGTGTCTCAGCAGAATCAATGCAATGTTCTTATGATTCAAAGGGAAACAGTGTCCCCACTATTCTGCTACTGATGCAGGAAAGATTATACTCACAGGGAGGATTGAAGGCTGAAGGAATATTCCGTATAAATCCGGAGAACGGTGAAGAGGAACATTTGAGGGAGCAATTGAATAGAGGCATTGTGCCGAATGACATTGATGTTCATTGTTTGGCTGGTTTGATAAAAGCATGGTTTAGGGAACTTCCTTCAGGAATTTTAGATGGACTTTCGCCTGAGGAAGTTCTTGAATGCAACACGGAAGAAGAATCTGTTGAGCTTGTGAAGGAGCTGAAACCGGTTGAATCAGCTTTGCTTAGTTGGGCTATTGATCTCATGGCTGATGTTGTAGTTGAAGCGGACTATAATAAAATGGATGCTAGAAATATTGCAATGGTTTTTGCGCCAAATATGACTCAGATGTCGGATCCATTAACTGCTCTAATGCACGCGGTCCAAGTGATGAATTTACTTAAAACACTGATATTGAAGACACTTCGAGATCGCGAAGAGACATCAACAGAAGAATATTCATCCATGTCATCTCATTCATCAGATCATCAATCAGAAGTAGATGACTACGACAGTCAACAAGAAATGGATACTAATGGCGAATCCAAAAGAGCCAAATTAGATTATGATGATCATGCTGACTACAGCCACAACCTTGAAGAGGCAGCTGCATCTGTAGAGAGTCCAAAGAGTTGTTCTAACTATCACACGGAATCTGTTATATCAGTTACTGATACAAAAACTGAGGATTCTTGCTTGAGTTCCAGTTCTAGAAACGACTCGACAACTACTGAGGGATCGAATGATGATACAACAAGTAGTCCATCGATACAAAGTAAAGAAACCAATGATGTGGAGATGGTAAATAAATGCGGCGTTTCGGTTTCATCTAGTTAA 1266 0.425 MRGPVVVSGGCGSGVKGRRGGRDGGEEVSPAALMLAALKKSMVACSVESPDDVISTVHHPMEIGWPTNVKHVSHVTFDRFNGFLGLPLELEVHVPAPVPSASVSVFGVSAESMQCSYDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENGEEEHLREQLNRGIVPNDIDVHCLAGLIKAWFRELPSGILDGLSPEEVLECNTEEESVELVKELKPVESALLSWAIDLMADVVVEADYNKMDARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLILKTLRDREETSTEEYSSMSSHSSDHQSEVDDYDSQQEMDTNGESKRAKLDYDDHADYSHNLEEAAASVESPKSCSNYHTESVISVTDTKTEDSCLSSSSRNDSTTTEGSNDDTTSSPSIQSKETNDVEMVNKCGVSVSSS 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05506 421 Gene3D Rho GTPase activation protein 95 291 IPR008936 -
Vivi6g05506 421 Gene3D CRIB domain 58 94 IPR036936 -
Vivi6g05506 421 CDD RhoGAP 125 275 - -
Vivi6g05506 421 SMART PBD_5 63 97 IPR000095 -
Vivi6g05506 421 FunFam Rho GTPase-activating protein 5 93 286 - -
Vivi6g05506 421 Pfam P21-Rho-binding domain 62 90 IPR000095 -
Vivi6g05506 421 ProSiteProfiles Rho GTPase-activating proteins domain profile. 108 289 IPR000198 GO:0007165
Vivi6g05506 421 MobiDBLite consensus disorder prediction 366 421 - -
Vivi6g05506 421 Pfam RhoGAP domain 125 259 IPR000198 GO:0007165
Vivi6g05506 421 PANTHER MKIAA1688 PROTEIN 25 387 IPR044785 GO:0005096
Vivi6g05506 421 SMART RhoGAP_3 122 285 IPR000198 GO:0007165
Vivi6g05506 421 MobiDBLite consensus disorder prediction 305 324 - -
Vivi6g05506 421 MobiDBLite consensus disorder prediction 1 26 - -
Vivi6g05506 421 ProSiteProfiles CRIB domain profile. 63 76 IPR000095 -
Vivi6g05506 421 MobiDBLite consensus disorder prediction 291 324 - -
Vivi6g05506 421 SUPERFAMILY GTPase activation domain, GAP 104 282 IPR008936 -
Vivi6g05506 421 CDD CRIB 61 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05506 Vivi-Chr6 160672688 160675189 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05506 - K20642 gmx:100812700 554.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05506 6 160672688 160675189 Vivi6g05506 6 160672688 160675189 ECH
Vivi6g05506 6 160672688 160675189 Vivi1g05229 1 113657451 113660515 PCT