Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05229 ATGACGGGACTTGTCATGGTTACCAGAGGCGGAGGAAGTAAGAGAACGAGAGAAGCACGGGTGGCTGAGGAAGAGGAAGAGCGGAACCAGCTTTCGCTTGTGGCGTTGCTGTTGGCTGCTATTAGGAAATCTATGGTGGCATGCAGAGTGGATAGACCTGATGAGGTGATTTCGAGTGTTGGTCAGATGGAGATCGGGTGGCCGACGGATGTTCAGCATGTTACTCATGTTACGTTTGATCGGTTTAATGGGTTTCTTGGGCTTCCGGTTGAGTTTGAAGTTGAGATCCCGGGGCGTGTTCCCAGTGCTAGTGTAAGTGTGTTTGGAGTCTCAGCTGAATCTATGCAGTGTACTTATGATTCAAAAGGAAACAGTGTCCCTACTATTCTCATGTTAATGCAGGATCGTTTATATTCCCAGGGAGGATTGAAGGCTGAAGGTATATTTCGCATAAACCCAGAAAATAGTAAAGAGGAGCATGTGAGAAACCAATTGAATAGTGGTATTGTGCCTGATGACATTGATGTCCACTGCTTGGCGGGACTGATCAAAGCGTGGTTCCGAGAGCTTCCTTCCGGAGTGCTAGACGGTCTTTCCCCTGAACAAGTTCTTCAATGCAACACAGAAGAAGAATCTTTTGAGCTTGTGAAGCAGCTTAAACCAACCGAGTCAGCCTTACTCGGCTGGGCTATTGATCTCATGGCTGATGTTGTCCAAGAAGAGGAACATAACAAAATGAATGCAAGAAACATTGCAATGGTTTTTGCTCCAAACATGACTCAGATGTCTGATCCTCTAACTGCGCTAATGCATGCGGTTCAAGTGATGAACTTGCTAAAGACGTTGATAATGAAGACCCTTAGGGAACGTGAAGAAACAGCAACAGGTGGATATTCACCCATGTCTTTTCGGACATCATTTCGCCGGTCAGAGGATGAATACGACAGTCAGCGAGAAACAGCTACGTGTGGATATTCACCCATGTCCTATCGCTCATCCTATCGTCCATCTGAGGATGAATATGACAGTCAACTAGAAATAGACGCAAGCGGTGAATTGAAAGGGACCAAATCAGATTTCAATGATCACACTCATTACAGAAATAGCAGTGAAGAGGAATTGGAGGCTGAATCTCTGACCGAGATAGAAGAATGCTTCTTAAAACAGTTGGACGAGAATGTGAGTACAACCAAAGAATTCTCAGAAGAAGAACCTGCAGATTATTTGCAAGAGTGTGTGAGCTCCAAAAGTTGCTGCGACTATAGTGCAGAACCAGCTTTATCAATTACAGATAGCAAAACTGTGAATTCGTGCTTGAGTTCGGACAAAGAAAAGATAAATGTTGACGCAATGATTCCGTTAATAGGGTGGACAGACACAGATGATGTGGAGATGGTTGATAAATTCACAGATTCGGTTTCGCCAGTGCCGCTGCTTGCATCTAGCTAA 1449 0.4479 MTGLVMVTRGGGSKRTREARVAEEEEERNQLSLVALLLAAIRKSMVACRVDRPDEVISSVGQMEIGWPTDVQHVTHVTFDRFNGFLGLPVEFEVEIPGRVPSASVSVFGVSAESMQCTYDSKGNSVPTILMLMQDRLYSQGGLKAEGIFRINPENSKEEHVRNQLNSGIVPDDIDVHCLAGLIKAWFRELPSGVLDGLSPEQVLQCNTEEESFELVKQLKPTESALLGWAIDLMADVVQEEEHNKMNARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLIMKTLREREETATGGYSPMSFRTSFRRSEDEYDSQRETATCGYSPMSYRSSYRPSEDEYDSQLEIDASGELKGTKSDFNDHTHYRNSSEEELEAESLTEIEECFLKQLDENVSTTKEFSEEEPADYLQECVSSKSCCDYSAEPALSITDSKTVNSCLSSDKEKINVDAMIPLIGWTDTDDVEMVDKFTDSVSPVPLLASS 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05229 482 MobiDBLite consensus disorder prediction 319 333 - -
Vivi1g05229 482 Pfam RhoGAP domain 127 261 IPR000198 GO:0007165
Vivi1g05229 482 Gene3D Rho GTPase activation protein 98 293 IPR008936 -
Vivi1g05229 482 CDD RhoGAP 127 283 - -
Vivi1g05229 482 FunFam Rho GTPase-activating protein 5 95 288 - -
Vivi1g05229 482 ProSiteProfiles Rho GTPase-activating proteins domain profile. 113 291 IPR000198 GO:0007165
Vivi1g05229 482 ProSiteProfiles CRIB domain profile. 65 78 IPR000095 -
Vivi1g05229 482 SUPERFAMILY GTPase activation domain, GAP 106 284 IPR008936 -
Vivi1g05229 482 MobiDBLite consensus disorder prediction 293 337 - -
Vivi1g05229 482 PANTHER MKIAA1688 PROTEIN 15 373 IPR044785 GO:0005096
Vivi1g05229 482 SMART RhoGAP_3 124 287 IPR000198 GO:0007165
Vivi1g05229 482 Pfam P21-Rho-binding domain 64 93 IPR000095 -
Vivi1g05229 482 Gene3D CRIB domain 61 96 IPR036936 -
Vivi1g05229 482 SMART PBD_5 65 99 IPR000095 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05229 Vivi-Chr1 113657451 113660515 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05229 - - tpra:123918915 737.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g05229 1 113657451 113660515 Vivi1g05229 1 113657451 113660515 ECH
Vivi6g05506 6 160672688 160675189 Vivi1g05229 1 113657451 113660515 PCT