Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05490 ATGCAGAAAATGACGAACCGTTTCCCTGAGGAAGTTCTCGAGTACGTGTTCTCCTTCATTCAATGTGACAAAGACCGAAACGCTATCTCTTTAGTGTGTAAATCATGGTACGAGATCGAACGGTGGTGCAGGAGGCAGATTTTCGTCGGGAACTGCTATGCCGTGAGTCCTTCAACGGTGACGAAACGGTTTCCGGAGCTGAGATCCATTTCGTTGAAAGGGAAACCGCACTTTGCGGACTTCAATTTGGTGCCGGAAGGATGGGGAGGTTACGTTAGTCCGTGGATCGCGGCTATGGCGTGTGGTTTGCCGTTGCTGGAAGAGATTCGGCTCAAGAGGATGGTTATAACAGATGAGAGCTTGGAGCTTATTGCTAAGTCGTTTAAGAATTTTAAGGTTTTGGTGCTTATTTCGTGTGAGGGGTTTACGACGGATGGACTTGCTGCCATTGCTTCTAATTGCAGGAATTTGAAGGAATTGAACTTGCAGGAGAGTGAACTGGAGGACCTTAGTGGGCATTGGTTAAGCCAATTTCCTGATTCTTACACATCATTAGTGTCACTTAACATCTCTTGCTTGAACAATGAGGTGAATTTGTCCGCACTAGAGCGTCTGCTTGGTAGGTGTCCTAACCTCCAGACTCTTCGTCTCAATCATGCTGCGCCCCTTGATAAACTGCCGAACTTACTTAGCCGATGTCCTCAGCTGGCTGAGTTAGGCACAGGAGTTTACTCAGCTGAGATGCGTCCAGATGTCTTTTCAAACCTAGTAACCGCATTTGCTGGGTGTAAGCAATTGAAGAACTTGTCTGGTTTTTGGCAAGTTCTGCCATCCTACCTTCCGGCACTAAATCCTGTCTGCACTAGGCTAACATCACTAAACCTGAGTTATGCTGTCATTCAAAGCTCTGATCTTATCAAGCTTGTCGGTCAATGCCCCAATTTGTTGCGGTTTTGGGTGCTTGATTACATAGAAGATGCTGGTCTTGATGCCGTTGCTGCTTCATGCAAGGATCTACAAGAGTTGAGGGTGTTTCCTTCTGATCCATTTGGCTTAGAGCCAAATATTGCGTTGACAGAACAGGGTCTTGTCTCTGTATCTAAAGGCTGCCCAAAGCTCCAGTCCATTCTATATTTTTGTCGTCAAATGTCTAATGCTGCTCTAAATACTATTGCGCAGAATAGGCCTAATTTGACTCGCTTTCGCCTGTGTATTCTGGAGCCTCGAACTCCTGACTATCTTACCCTTCAACCACTGGATTCTGGTTTTGGAGCTATTGTAGAACATTGTAAGGATCTTCGGCGTCTTTCCCTTTCTGGCCTTCTTACTGATCGTGTTTTTGAGTATATTGGAACTCACGCGAAGAAGCTGGAGATGCTATCTGTTGCCTTTGCTGGAGATAGCGATTTGGGTCTCCATTATATGCTGTCTGGGTGCGATAATCTTAGGAAGCTAGAGATCAGGGACTGCCCCTTTGGTGACAAGGCTCTCTTGGCCAATGCGGCAAAACTCGAGACAATGCGATCCCTTTGGATGTCCTCTTGCCCAGTGAGTTATGGAGCATGTAAGCTACTGGGACAGCAAATGCCCAGACTTAATGTTGAAGTCATTGATGAAAGAGGATCTCCAGATTCAAGGCCAGATAGTTGTCCTGTGGAGAAGCTTTATATATACAGGAGTACTGCCGGGCCAAGGTTGGACATGCCTGATTTTGTCTGGACAATGGAGGATGATTCCTCCGTACGACTCGAGCAACCTAGCAGTGTATAG 1770 0.4644 MQKMTNRFPEEVLEYVFSFIQCDKDRNAISLVCKSWYEIERWCRRQIFVGNCYAVSPSTVTKRFPELRSISLKGKPHFADFNLVPEGWGGYVSPWIAAMACGLPLLEEIRLKRMVITDESLELIAKSFKNFKVLVLISCEGFTTDGLAAIASNCRNLKELNLQESELEDLSGHWLSQFPDSYTSLVSLNISCLNNEVNLSALERLLGRCPNLQTLRLNHAAPLDKLPNLLSRCPQLAELGTGVYSAEMRPDVFSNLVTAFAGCKQLKNLSGFWQVLPSYLPALNPVCTRLTSLNLSYAVIQSSDLIKLVGQCPNLLRFWVLDYIEDAGLDAVAASCKDLQELRVFPSDPFGLEPNIALTEQGLVSVSKGCPKLQSILYFCRQMSNAALNTIAQNRPNLTRFRLCILEPRTPDYLTLQPLDSGFGAIVEHCKDLRRLSLSGLLTDRVFEYIGTHAKKLEMLSVAFAGDSDLGLHYMLSGCDNLRKLEIRDCPFGDKALLANAAKLETMRSLWMSSCPVSYGACKLLGQQMPRLNVEVIDERGSPDSRPDSCPVEKLYIYRSTAGPRLDMPDFVWTMEDDSSVRLEQPSSV 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05490 589 Pfam Transport inhibitor response 1 protein domain 65 111 IPR041101 -
Vivi6g05490 589 SMART LRR_CC_2 128 153 IPR006553 -
Vivi6g05490 589 SMART LRR_CC_2 287 311 IPR006553 -
Vivi6g05490 589 SMART LRR_CC_2 103 127 IPR006553 -
Vivi6g05490 589 SMART LRR_CC_2 430 453 IPR006553 -
Vivi6g05490 589 SMART LRR_CC_2 479 503 IPR006553 -
Vivi6g05490 589 SMART LRR_CC_2 370 394 IPR006553 -
Vivi6g05490 589 FunFam Transport inhibitor response 1 4 44 - -
Vivi6g05490 589 SUPERFAMILY RNI-like 33 533 - -
Vivi6g05490 589 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 86 535 - -
Vivi6g05490 589 SUPERFAMILY F-box domain 5 39 IPR036047 GO:0005515
Vivi6g05490 589 CDD F-box_AtTIR1-like 6 44 - -
Vivi6g05490 589 Gene3D Ribonuclease Inhibitor 45 575 IPR032675 -
Vivi6g05490 589 FunFam Transport inhibitor response 1 45 575 - -
Vivi6g05490 589 Pfam F-box 6 46 IPR041567 -
Vivi6g05490 589 SMART fbox_2 8 49 IPR001810 GO:0005515
Vivi6g05490 589 Gene3D - 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05490 Vivi-Chr6 160464197 160467995 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05490 K14485 - gmx:100816241 1043.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05490 6 160464197 160467995 Vivi6g05490 6 160464197 160467995 ECH
Vivi6g05490 6 160464197 160467995 Vivi1g05240 1 114024091 114027000 PCT