Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05240 ATGCAGAGAGTAGCGTACTCGTACTCGTTCCCTGAGGAAGTACTCGAGCACGTCTTCTCATTCATCGAATCTGACCAAGACAGAGGCTCGATCTCGCTCGTCTGCAAATCATGGTACGAGATTGAGCGGTGGTGCAGACGGAGAGTCTTCATCGGAAACTGCTACGCGGTGAGTCCGGCGATGGTGATAAAACGTTTTCCGAAAGTGAGATCTATAACACTGAAAGGGAAACCGCACTTTGCGGACTTCAATTTGGTGCCGGAAGGTTGGGGTGGTTATGTCTGTCCTTGGATCAAAGCTATGGCTGCGGCTTATCCGTGTCTGCAGGAGATTAGGCTCAAGAGAATGGTTATTACCGATGATTCTTTGGACCTTATTGCGAAATCGTTTAAGAATTTCACGGTTTTGGTGCTTATTTCTTGTGAGGGTTTCACTACTGATGGACTTGCCGCCATTGCTGCCAATTGCAGGAATTTGAGAGAGCTGGACTTGCGGGAGAGTGAAGTGGAGGATATTTGCGGCCATTGGTTAAGCCATTTTCCTGATTCATACACATCATTGGTTTCGCTCAACATCTCTTGCTTGGCAAACGAGGTGAATTTTCCTGCACTCGAGCGCCTGGTTAGTAGGTGTCCTAACTTGCAAACTCTCCGTCTCAATCGGGCTGCGCCCCTTGATAAGCTTGCCAACCTCCTTAGGGGGGCTCCTCAGCTTGTTGAGATAGGCACTGGAGCCTACACGTCTGAGATGCGGCCGGAGGTCTTTTCGAACCTGACGGCAGCATTTTCTGGGTGTATGCAAATGAAGACCTTGTCTGGCTTTTGGGATGTGCTACCATCCTACTTACCTGCTGTCTATCCTGTATGCTCCAAACTCACATCACTGAACTTAAGTTATGCTACAATCCAAAGCCCGGATCTTATCAAGCTTGTTGGTGAATGTGGGAGTTTGCAGCGATTATGGGTGTTGGATTACATAGAAGATGCTGGCCTTGACATGCTTGCTGCATCGTGTAAGGATCTGAGGGAGTTAAGGGTGTTTCCATCTGACCCATTTGGGTTGGAACCAAATGTAGCGTTGACAGAGCAGGGCCTTGTTTCTGTGTCTGAAGGTTGCCCCAAGCTCCATTCAGTTCTATATTTTTGTCGTCAAATGACCAATGCTGCCCTAATTACAATTGCTCGGAACAGGCCCAATTTGACTCGTTTTAGACTATGTATTATTGAGCCTCGCACTCCTGACTATCTTACCCGTCAATCGCTGGATGTTGGCTTTGGAGCTATTGTTGAGCATTGTAAGAGTCTTCGGCGCCTCTCCCTCTCAGGGCTTCTCACCGACCGTGTTTTTGAGTATATTGGGACTTTTGGGAAGAAGCTTGAGATGCTTTCAGTAGCTTTTGCTGGAGAAAGTGATTTGGGACTACATCACGTGCTCTCCGGATGTGACAACCTTAGGAAGTTGGAGATCAGGGACTGCCCCTTTGGTGACAAAGCTCTTTTAGCCAATGCTGCGAAATTGGAGACAATGCGATCCCTTTGGATGTCCTCTTGCCATGTGAGTTATGGAGCATGTAAACTGTTGGGTCTGAAGTTGCCGAGACTCAATGTTGAAGTCATTGATGAAAGAGGACCTCCAGATTCAAGGCCAGATAATAGTCCAGTTGAGAAGCTATACATATACAGGACAATTTCTGGGCCTAGATTGGACATGCCAGGTTATGTATGGACAATGGAAGATGATTCTGCATATCCTGAATGA 1758 0.4738 MQRVAYSYSFPEEVLEHVFSFIESDQDRGSISLVCKSWYEIERWCRRRVFIGNCYAVSPAMVIKRFPKVRSITLKGKPHFADFNLVPEGWGGYVCPWIKAMAAAYPCLQEIRLKRMVITDDSLDLIAKSFKNFTVLVLISCEGFTTDGLAAIAANCRNLRELDLRESEVEDICGHWLSHFPDSYTSLVSLNISCLANEVNFPALERLVSRCPNLQTLRLNRAAPLDKLANLLRGAPQLVEIGTGAYTSEMRPEVFSNLTAAFSGCMQMKTLSGFWDVLPSYLPAVYPVCSKLTSLNLSYATIQSPDLIKLVGECGSLQRLWVLDYIEDAGLDMLAASCKDLRELRVFPSDPFGLEPNVALTEQGLVSVSEGCPKLHSVLYFCRQMTNAALITIARNRPNLTRFRLCIIEPRTPDYLTRQSLDVGFGAIVEHCKSLRRLSLSGLLTDRVFEYIGTFGKKLEMLSVAFAGESDLGLHHVLSGCDNLRKLEIRDCPFGDKALLANAAKLETMRSLWMSSCHVSYGACKLLGLKLPRLNVEVIDERGPPDSRPDNSPVEKLYIYRTISGPRLDMPGYVWTMEDDSAYPE 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05240 585 Gene3D Ribonuclease Inhibitor 47 577 IPR032675 -
Vivi1g05240 585 CDD F-box_AtTIR1-like 9 46 - -
Vivi1g05240 585 Gene3D - 5 46 - -
Vivi1g05240 585 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 89 537 - -
Vivi1g05240 585 Pfam F-box 8 48 IPR041567 -
Vivi1g05240 585 SMART fbox_2 10 51 IPR001810 GO:0005515
Vivi1g05240 585 SMART LRR_CC_2 372 396 IPR006553 -
Vivi1g05240 585 SMART LRR_CC_2 432 455 IPR006553 -
Vivi1g05240 585 SMART LRR_CC_2 130 155 IPR006553 -
Vivi1g05240 585 SMART LRR_CC_2 481 505 IPR006553 -
Vivi1g05240 585 SMART LRR_CC_2 105 129 IPR006553 -
Vivi1g05240 585 SMART LRR_CC_2 156 193 IPR006553 -
Vivi1g05240 585 FunFam Transport inhibitor response 1 6 46 - -
Vivi1g05240 585 SUPERFAMILY F-box domain 8 44 IPR036047 GO:0005515
Vivi1g05240 585 SUPERFAMILY RNI-like 43 534 - -
Vivi1g05240 585 FunFam Transport inhibitor response 1 47 577 - -
Vivi1g05240 585 Pfam Transport inhibitor response 1 protein domain 67 113 IPR041101 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05240 Vivi-Chr1 114024091 114027000 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05240 K14485 - gmx:100809794 1048.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g05240 1 114024091 114027000 Vivi1g05240 1 114024091 114027000 ECH
Vivi6g05490 6 160464197 160467995 Vivi1g05240 1 114024091 114027000 PCT