Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05477 ATGGATAAAGTGATGAGGTTGGCATCTGAGAAAGGTGTGGTGATTTTCACAAAAAGCTCTTGTTGTCTATGCTATGCAGTTAACATTTTGTTTAAAGAACTTGGGATTAGGCCTATGGTTTATGAAATAGATCAGGATCCTGAAGGAAGGGAAATGGAGAAAGCTTTGATGAGGTTAGGTTGCACTGCACCTGTTCCTGCTGTGTTCATTGGAGGGAAACTGAGAGGTTCCACTAATGAAATCATGTCACTTCACCTAAGTGGTTCACTCACTCAGATGCTGAAACCATATCAGTCTTGTTCTTGA 306 0.4085 MDKVMRLASEKGVVIFTKSSCCLCYAVNILFKELGIRPMVYEIDQDPEGREMEKALMRLGCTAPVPAVFIGGKLRGSTNEIMSLHLSGSLTQMLKPYQSCS 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05477 101 PANTHER GLUTAREDOXIN 1 96 IPR011905 -
Vivi6g05477 101 NCBIfam glutaredoxin-like family 4 98 IPR011905 -
Vivi6g05477 101 Gene3D Glutaredoxin 1 100 - -
Vivi6g05477 101 ProSiteProfiles Glutaredoxin domain profile. 1 101 - -
Vivi6g05477 101 FunFam Glutaredoxin family protein 1 101 - -
Vivi6g05477 101 Pfam Glutaredoxin 13 74 IPR002109 -
Vivi6g05477 101 CDD GRX_GRXh_1_2_like 13 93 - -
Vivi6g05477 101 SUPERFAMILY Thioredoxin-like 1 97 IPR036249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05477 Vivi-Chr6 160392863 160393568 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05477 1 95 Miscellaneous Gene Families AT4G15670 50.526 6.28e-34 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05477 K03676 - mtr:11433569 190.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05477 6 160392863 160393568 Vivi6g05477 6 160392863 160393568 ECH
Vivi6g05477 6 160392863 160393568 Vivi1g05247 1 114210501 114211052 PCT