Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05247 ATGGAGAAAGTGATGAGGTTGGCTACAGAAAAGGGTGTGGTGATTTTCACAAAGAGTTCTTGTTGCATGTGTTATGCAGTGAACATTCTTTTTCAAGACATTGGAGTGTACCCTGTGATTCATGAAATTGACAAAGACCCAGAAGGGAAGGAAATGGAGAAAGCTATAACTAAGTTGGGTTGTAATGCACCTGTTCCTGCAGTGTTCATAGGAGGAAAGCTTGTGGGGTCTACCAATGAAGTAATGTCCCTTCACTTAAGGGGTTCACTCATTCCACTGCTGAGGCCATATCGATTTTAA 300 0.42 MEKVMRLATEKGVVIFTKSSCCMCYAVNILFQDIGVYPVIHEIDKDPEGKEMEKAITKLGCNAPVPAVFIGGKLVGSTNEVMSLHLRGSLIPLLRPYRF 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05247 99 PANTHER GLUTAREDOXIN 1 95 IPR011905 -
Vivi1g05247 99 Pfam Glutaredoxin 13 75 IPR002109 -
Vivi1g05247 99 FunFam Glutaredoxin family protein 1 99 - -
Vivi1g05247 99 NCBIfam glutaredoxin-like family 4 96 IPR011905 -
Vivi1g05247 99 SUPERFAMILY Thioredoxin-like 1 96 IPR036249 -
Vivi1g05247 99 CDD GRX_GRXh_1_2_like 13 93 - -
Vivi1g05247 99 ProSiteProfiles Glutaredoxin domain profile. 1 99 - -
Vivi1g05247 99 Gene3D Glutaredoxin 1 98 - -
Vivi1g05247 99 PRINTS Glutaredoxin signature 72 85 IPR014025 -
Vivi1g05247 99 PRINTS Glutaredoxin signature 58 71 IPR014025 -
Vivi1g05247 99 PRINTS Glutaredoxin signature 13 31 IPR014025 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05247 Vivi-Chr1 114210501 114211052 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05247 1 95 Miscellaneous Gene Families AT4G15670 54.737 8.60e-37 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05247 K03676 - nnu:104587597 175.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g05247 1 114210501 114211052 Vivi1g05247 1 114210501 114211052 ECH
Vivi6g05477 6 160392863 160393568 Vivi1g05247 1 114210501 114211052 PCT
Vivi1g05247 1 114210501 114211052 Vivi6g05476 6 160388399 160389236 PCT