Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05472 ATGGATTTGTTAGCATCATTGACAGAGAACAAAGCAGTTGTGATCTTCAGCAAAAGCACATGTATCATGAGTCACACAGTGCAAGCACTCATGAGAAATTTCGGAGCCGAGCCGATAATTATCGAGATTGATAAAATGGCAAATGGATATCAAATAGAGAGAGCACTGATTCAGCTTGGTTGCAGACCAAGTGTACCAGCAGTTTTCATAGGACAACAATTCATAGGTGGTACTGATGAAGTTATAAGCCTCAATGTTCAAAACAAGCTTGCTCCATTGCTTTTAAAGGCTAGAGCTATTTTCATTTGGTAG 312 0.3942 MDLLASLTENKAVVIFSKSTCIMSHTVQALMRNFGAEPIIIEIDKMANGYQIERALIQLGCRPSVPAVFIGQQFIGGTDEVISLNVQNKLAPLLLKARAIFIW 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05472 103 Pfam Glutaredoxin 13 75 IPR002109 -
Vivi6g05472 103 SUPERFAMILY Thioredoxin-like 2 99 IPR036249 -
Vivi6g05472 103 PANTHER GLUTAREDOXIN 2 101 IPR011905 -
Vivi6g05472 103 CDD GRX_GRXh_1_2_like 12 93 - -
Vivi6g05472 103 ProSiteProfiles Glutaredoxin domain profile. 1 101 - -
Vivi6g05472 103 NCBIfam glutaredoxin-like family 6 101 IPR011905 -
Vivi6g05472 103 Gene3D Glutaredoxin 2 101 - -
Vivi6g05472 103 PRINTS Glutaredoxin signature 58 71 IPR014025 -
Vivi6g05472 103 PRINTS Glutaredoxin signature 72 85 IPR014025 -
Vivi6g05472 103 PRINTS Glutaredoxin signature 13 31 IPR014025 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05472 Vivi-Chr6 160332481 160333675 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05472 1 102 Miscellaneous Gene Families AT4G15700 46.078 2.36e-32 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05472 K03676 - gmx:100775606 159.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05472 6 160332481 160333675 Vivi6g05472 6 160332481 160333675 ECH
Vivi1g05263 1 114973117 114973443 Vivi6g05472 6 160332481 160333675 PCT