Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05447 ATGGCCACTCTTCCTGCTTCCCCTTCACCCCCTTGGCCAAACCCTAACACTAACCCTAATCTCAATTCAATCCCAAACCCTAATTTCCATCCTGATCAATCTCAAACCCTTGACTTCGATTCCCTAATGTCCCCCCAATCTCACCACGCTTCCACCGATTCACCACCGGAGTCTCCTCCCGCCACACCACCGTCGCTTCTTCATCTCTCCTTTAACCAGGACCACGCCTGCTTCGCCGCCGCCACTGATAACGGCTTCCGCATATACAACTGCGACCCTTTCCGCGAGCTTTTTCGACGGGAGTTCGGTGGAGGCGGAATCGGCCATGTTGAGATGCTTTTCCGATGTAATATATTAGCACTTGTCGGCGGTGGGTCTCATCCTCAGTATCCTCCCACCAAAGTCATGATCTGGGATGATCATCAAGGGACGTGCATCGGGGAGCTCTCGTTTCGTTCTCCGGTTAGCGGTGTTCGGCTGCGGCGGGATCGGATAATTGTTGTGGTGGAGCAGAAGATATTTGTGTATAATTTTGCTGACTTGAAGCTGTTGCATCAGATTGAAACCATTGCGAACCCTAAGGGGCTTTGTGAAGTTTCGCACTTGACTGATTCGCTTGTTCTCGCTTGCCCTGGTTTACATAAAGGGCAGATTCGCATTGAGCATTTTTCGCAGAAGAGGACTAAGTTTATTTCTGCTCATGATTCCAGAATAGCTTGCTTCGCTCTCACGCTTGATGGACAGTTTATCGCCACTGCCAGCACCAAGGGTACCCTGATTCGGATTTATGATGCCGAACTTGGCACACTACTTCAGGAAGTAAGAAGAGGTGCAAATGCAGCAGAGATATTTAGTTTGGCGTTTTCTTCCACTGCTCAGTGGTTAGCAGTTTCCAGTGACAAGGGTACTGTCCATGTTTTTGGCCTTAAGGTTAATCCCAATGTCCCTGAGAATGAAAACTCCCCTGGGTCGTCGAGTTCAGATGCCGCCATTGCCCCAGCTAGCTCGTCTCGCTCCTTCATTAAATTTAAAGGAGTGTTGCCCAAGTATTTCAATTCAGAATGGTCAGTTGCTCGGTTTCACTTACACGAGGGCACTCAGTACACAGTTGCATTTGGTATCGAGAAGAATACAGTCATAATTCTTGGCATGGATGGAAGCTTCTATAAATGCCAATTCGATCCAGCGCAAGGAGGTGAAATGACCCAGCTTGAATTTCATAATATTTTAATGTCTGAAACAGCCTTGTGA 1251 0.482 MATLPASPSPPWPNPNTNPNLNSIPNPNFHPDQSQTLDFDSLMSPQSHHASTDSPPESPPATPPSLLHLSFNQDHACFAAATDNGFRIYNCDPFRELFRREFGGGGIGHVEMLFRCNILALVGGGSHPQYPPTKVMIWDDHQGTCIGELSFRSPVSGVRLRRDRIIVVVEQKIFVYNFADLKLLHQIETIANPKGLCEVSHLTDSLVLACPGLHKGQIRIEHFSQKRTKFISAHDSRIACFALTLDGQFIATASTKGTLIRIYDAELGTLLQEVRRGANAAEIFSLAFSSTAQWLAVSSDKGTVHVFGLKVNPNVPENENSPGSSSSDAAIAPASSSRSFIKFKGVLPKYFNSEWSVARFHLHEGTQYTVAFGIEKNTVIILGMDGSFYKCQFDPAQGGEMTQLEFHNILMSETAL 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05447 416 SMART WD40_4 56 90 IPR001680 GO:0005515
Vivi6g05447 416 SMART WD40_4 267 308 IPR001680 GO:0005515
Vivi6g05447 416 SMART WD40_4 142 177 IPR001680 GO:0005515
Vivi6g05447 416 SMART WD40_4 224 264 IPR001680 GO:0005515
Vivi6g05447 416 MobiDBLite consensus disorder prediction 1 20 - -
Vivi6g05447 416 Gene3D - 65 390 IPR015943 GO:0005515
Vivi6g05447 416 SUPERFAMILY WD40 repeat-like 58 316 IPR036322 GO:0005515
Vivi6g05447 416 PANTHER WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED 63 408 - -
Vivi6g05447 416 MobiDBLite consensus disorder prediction 21 55 - -
Vivi6g05447 416 MobiDBLite consensus disorder prediction 1 66 - -
Vivi6g05447 416 Pfam WD domain, G-beta repeat 277 307 IPR001680 GO:0005515
Vivi6g05447 416 FunFam Autophagy-related protein 18a isoform A 64 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05447 Vivi-Chr6 160034679 160036902 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05447 K22991 - gmx:100781692 611.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05447 6 160034679 160036902 Vivi6g05447 6 160034679 160036902 ECH
Vivi6g05447 6 160034679 160036902 Vivi1g05627 1 123773648 123776585 ECH