Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05627 ATGTCTCACACCTCTCAAACCCTAATGCCTCTCGATTCCGAAGAACCGCCTTCGTCAACCCCAATTCCCTCTCCTCCCAATCCATCCCCGAATTCTACACCCACCGCTCTTCATATTTCTTTCAACCAAGACTCCGGTTGCTTCGCCGTTGGAACCGATCAAGGCTTCAGAATCTATAACTGCGACCCTTTTAGGGAAATATTCCGACGCGATTTCGGTCATGGAGGCGGAATCGGTTTGGTTCATATGTTGTTTCGATGCAATATTCTTGCTTTTGTCGGCGGGGGAGCGGACCCTCGGTATCCGGCTGATAGGGTGATGATCTGGGACGATCATCAGTCGCGGTGTATTGGAGAGTTGTCGTTTCGGTCGGAGGTGAAAGGGATTCGTTTGAGGAGGGATAGGATTGTGGTTGTTTTGGGGCATAAGATTTTTGTTTATAATTTCTCTGATCTTAAGGTTCTTCATCAAATTGAGACTATTGCAAACCCTAAGGGTCTCTGTGAGGTTTCACATCATTTGGAAAATATGGTGTTGGCTTGTCCTGGGTTGCAGAAAGGGCAGATTAGGGTTGAACATTATGCTTCCAAGAGAACCAAGTTCATCATGGCGCATGATTCTAGAATTGCTTGTTTTAATATAACCCAAGATGGGCTTTTACTTGCTACTGCAAGCTCCAAGGGGACTCTCATTAGGATTTTCAATACCTTGGATGGTTCTTTGCTCCAAGAGGTAAGGAGAGGTGCTGACCGAGCTGAGATATATAGCCTTGCCTTTTCTCCCACTGCTCAGTGGTTAGCTGTCTCGAGTGACAAGGGAACTGTTCATGTATTCAACCTGAAGGTTGATTCAGGATTGTTGGGGCACGAAAGATCACATTCTACATCAGAGTCTAGTCCTACTAGTCCATCGGCAGCTTTGTCTCTCTCATTTATTAGAGGTGTATTGCCCAAGTATTTTAGCTCGGAATGGTCCGTGGCTCAATTTCGCTTGCAAGAGGGTTTACAGTATAATGTTGCCTTTGGCCATCAGAAAAATACAGTTGTAATACTCGGCATGGATGGCAGCTTCTATCGATGTCAGTTTGATTCTGCAACCGGTGGGGAGATGACACAACTTGAATATTACAATTTCCTAAAGCCAGAAGAGACATTCTAG 1158 0.4542 MSHTSQTLMPLDSEEPPSSTPIPSPPNPSPNSTPTALHISFNQDSGCFAVGTDQGFRIYNCDPFREIFRRDFGHGGGIGLVHMLFRCNILAFVGGGADPRYPADRVMIWDDHQSRCIGELSFRSEVKGIRLRRDRIVVVLGHKIFVYNFSDLKVLHQIETIANPKGLCEVSHHLENMVLACPGLQKGQIRVEHYASKRTKFIMAHDSRIACFNITQDGLLLATASSKGTLIRIFNTLDGSLLQEVRRGADRAEIYSLAFSPTAQWLAVSSDKGTVHVFNLKVDSGLLGHERSHSTSESSPTSPSAALSLSFIRGVLPKYFSSEWSVAQFRLQEGLQYNVAFGHQKNTVVILGMDGSFYRCQFDSATGGEMTQLEYYNFLKPEETF 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05627 385 SMART WD40_4 238 279 IPR001680 GO:0005515
Vivi1g05627 385 SMART WD40_4 113 148 IPR001680 GO:0005515
Vivi1g05627 385 SMART WD40_4 195 235 IPR001680 GO:0005515
Vivi1g05627 385 Pfam WD domain, G-beta repeat 248 279 IPR001680 GO:0005515
Vivi1g05627 385 PANTHER WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED 32 378 - -
Vivi1g05627 385 SUPERFAMILY WD40 repeat-like 34 285 IPR036322 GO:0005515
Vivi1g05627 385 MobiDBLite consensus disorder prediction 16 32 - -
Vivi1g05627 385 FunFam Autophagy-related protein 18a isoform A 34 364 - -
Vivi1g05627 385 MobiDBLite consensus disorder prediction 1 35 - -
Vivi1g05627 385 Gene3D - 31 367 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05627 Vivi-Chr1 123773648 123776585 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05627 K22991 - gmx:100787427 610.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g05627 1 123773648 123776585 Vivi1g05627 1 123773648 123776585 ECH
Vivi6g05447 6 160034679 160036902 Vivi1g05627 1 123773648 123776585 ECH