Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04712 ATGAGGAGACTTTCATCTGTAACTGTTGTGGATGTGTTTCTGGTACTTGCATTGTTGTGTTGTAGCTCATGGAAAGTGTGGAGCAACACACTTTGCAAAGAGACAAATTTGGACAAAGTTAGGCCTCATAGTGTCAGTATTACTGAATTCGGTGCTGTTGGAGACGGGATCACGCTCAATACGAAAGCGTTTCAGAATGCGATTTTCTACCTAAATTCTTTCTCTGATAAAGGGGGAGCTAAGCTTTTTGTTCCTGCTGGTCGGTGGTTAACCGGTAGTTTTGATCTCATTAGCCACCTAACTTTGTGGTTGGATAAGGATGCTATAATTCTTGGATCAACGAACTCTGACGATTGGCCGGTTGTTGATCCTCTACCGTCTTATGGGCGAGGAAGGGAGTTGCCGGGTGCAAGGCATAGGAGCCTCATCTATGGAAGCAATTTGACCGATGTTATCATAACAGGTAATGAGGGGATTATTGACGGTCAAGGAAGTATCTGGTGGAGCAAGTTTAGGAACAAAACTCTGGATTATACGCGTCCTCATTTGGTAGAATTGATGAATTCGACCGGGATTCTCATTTCAAACTTAACCTTCTTGAATTCTCCGTTTTGGACTATTCATCCGGTTTATTGCAGCCAAGTTACAGTGCAGAACGTGACGATTCTTGCTCCTCTTGATTCACCAAACACCGATGGGATCGATCCAGACTCTTCCGATGATGTATGCATCGAAGACTGTTATATAAGTACTGGCGATGATCTGATTGCCATCAAAAGTGGGTGGGATGAGTATGGAATTGCATTTGGTCGGCCCAGCACAAATATTATCATCCACAGACTTGTCGGGAAAACTCAAGTAAGCGCAGGAATTGCTATCGGAAGTGAGATGTCGGGTGGTGTATCAAACGTTCATGCTCAAGATATTCGCTTTTACGATTCATATACAGCAATCAGAATAAAGACTTCACCTGGCAGAGGTGGTTACGTTAGAAACATCTATGTCTCTAACATGACATTGGCTAATGTTGATATCGCTATTAGGTTCACCGGTTTATACGGCGACCATCCAGACGATGGTTATGACCCAAACGCTCTACCGGTAATCGAAAAGATCACAATTGAGGACGTGAAAGGAGACAATATTAAAAAAGCGGGTCTTATAGAAGGTATAGAAGGCGACCATTTCGTCGATATCTGCTTATCAAACGTCATCCTTAATGTAAGCTCAAACTATCCATGGAACTGCTCTAATGTTAGAGGCTACTCTGACACGGTTTCCCCGGAAGCTTGTGAGCCGCTCAAGGAACGTATATTCCCCGACCATTGTTCAGACTGTTACCATTTGTCGAATCACCAACAAAGTTCAAACGATAAAACAAGAGGACAAAAATTTCACTTGACATAA 1407 0.43 MRRLSSVTVVDVFLVLALLCCSSWKVWSNTLCKETNLDKVRPHSVSITEFGAVGDGITLNTKAFQNAIFYLNSFSDKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAIILGSTNSDDWPVVDPLPSYGRGRELPGARHRSLIYGSNLTDVIITGNEGIIDGQGSIWWSKFRNKTLDYTRPHLVELMNSTGILISNLTFLNSPFWTIHPVYCSQVTVQNVTILAPLDSPNTDGIDPDSSDDVCIEDCYISTGDDLIAIKSGWDEYGIAFGRPSTNIIIHRLVGKTQVSAGIAIGSEMSGGVSNVHAQDIRFYDSYTAIRIKTSPGRGGYVRNIYVSNMTLANVDIAIRFTGLYGDHPDDGYDPNALPVIEKITIEDVKGDNIKKAGLIEGIEGDHFVDICLSNVILNVSSNYPWNCSNVRGYSDTVSPEACEPLKERIFPDHCSDCYHLSNHQQSSNDKTRGQKFHLT 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04712 468 SUPERFAMILY Pectin lyase-like 38 434 IPR011050 -
Vivi6g04712 468 Gene3D - 23 428 IPR012334 -
Vivi6g04712 468 PANTHER PECTIN LYASE-RELATED 23 444 - -
Vivi6g04712 468 Pfam Glycosyl hydrolases family 28 140 420 IPR000743 GO:0004650|GO:0005975
Vivi6g04712 468 SMART pbh1 301 322 IPR006626 -
Vivi6g04712 468 SMART pbh1 330 351 IPR006626 -
Vivi6g04712 468 SMART pbh1 273 295 IPR006626 -
Vivi6g04712 468 SMART pbh1 239 271 IPR006626 -
Vivi6g04712 468 SMART pbh1 212 238 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04712 Vivi-Chr6 149931246 149934623 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04712 13 461 Glycoside Hydrolase AT3G62110 68.845 0.0 641
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04712 - - vvo:131622689 952.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g04712 6 149931246 149934623 Vivi1g05413 1 118495680 118499311 PCT