Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05413 ATGAAAATACTTTCAACTCTGCTGATTTTGTTTTTGGCGTTGATTGGTTGTAGCTCATGGACAGTTTGGAGCAGCTCAACCTGCAAACATATAAACATTAATGAAGTTCGACCACACAGTGTCAGTATTACCGAATTTGGAGCCGTAGGCGATGGGATCACTCTCAATACAAAGGCGTTTCGGAATGCTATCTTTTACCTAAATTCATATGCCGACAAAGGTGGAGCCAAGCTTTTTGTCCCTGCTGGCCAGTGGTTAACTGGTAGTTTTGATCTAATCAGCCATCTGACTTTGTCGTTAGACAAGGATGCTGTAATTCTCGGATCAACGAACTTTGAAGATTGGCCGGTTGTGGATCCTCTACCATCATATGGTAGGGGAAGGGAGTTGCCGGGAAAACGGCATAGAAGCCTCATTTACGGGCACAACTTAACTGATGTTATCATAACAGGTAACAATGGAACTATAAACGGTCAAGGGAGTATCTGGTGGGACAAATTTCGTAACAAAACATTGGACTACACACGCCCCCATTTAGTCGAGTTAATGAATTCAACGGAGATTCTTATTTCAAATTTAACCTTCTTGAATTCACCATTTTGGAATATTCATCCGGTATATTGCAGACATGTTATAGTTCAGAATGTCACAATCCTAGCCCCTCTTAGTTCGCCAAATACAGATGGGATTGATCCAGATTCTTCCAATGATGTATGCATCGAAGACTGCTATATAAGCACCGGGGATGATCTGATTTCCATCAAAAGTGGATGGGATGAATATGGAATTGCATTTGGTCGACCAAGTACAAACATTATCATCCGCAGGCTCACTGGAAGGACAACGAGTGCCGGAATCTCTATAGGAAGTGAGATGTCCGGAGGTGTTTCAGAAGTTCATGCAGAAGATATTAACATTTTCGATTCACGTAGTGCAATTAGAATAAAAACTTCTCCAGGAAGAGGTGGTTACGTTAAAAATGTTTATATTGCTAACATGACATTGGTTAACATAGATATTGCAATTAGGTTCTCTGGTTTATACGGAGAGCATCCAGATGACGCGTATGATCCAGATGCTCTACCTGTGATAGAAAGGATTACTATCAAAGACGTGGTAGGGAAAAACATCAAACGCGCGGGCCTTATACAAGGTATTAAAGGTGACATGTTTGTCAATATTTGTCTATCGAACATTACTCTTAATGTGAGCAAGAAAAATCCATGGAACTGCTCGAACGTAAAAGGATACTCTGAATTGGTTTCTCCGAAAGCTTGTGCGCAACTCAACGAAAGAATATTCCCCGATCATTTTTCAGACTGTTATCAGTTAACAGATCTCGTTAAGAGTTCGAGTAGTCGCAACAGTGCTGCTTGGTTGCTGTCTTGGTAG 1392 0.4109 MKILSTLLILFLALIGCSSWTVWSSSTCKHININEVRPHSVSITEFGAVGDGITLNTKAFRNAIFYLNSYADKGGAKLFVPAGQWLTGSFDLISHLTLSLDKDAVILGSTNFEDWPVVDPLPSYGRGRELPGKRHRSLIYGHNLTDVIITGNNGTINGQGSIWWDKFRNKTLDYTRPHLVELMNSTEILISNLTFLNSPFWNIHPVYCRHVIVQNVTILAPLSSPNTDGIDPDSSNDVCIEDCYISTGDDLISIKSGWDEYGIAFGRPSTNIIIRRLTGRTTSAGISIGSEMSGGVSEVHAEDINIFDSRSAIRIKTSPGRGGYVKNVYIANMTLVNIDIAIRFSGLYGEHPDDAYDPDALPVIERITIKDVVGKNIKRAGLIQGIKGDMFVNICLSNITLNVSKKNPWNCSNVKGYSELVSPKACAQLNERIFPDHFSDCYQLTDLVKSSSSRNSAAWLLSW 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05413 463 Gene3D - 21 423 IPR012334 -
Vivi1g05413 463 PANTHER PECTIN LYASE-RELATED 10 437 - -
Vivi1g05413 463 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Vivi1g05413 463 Pfam Glycosyl hydrolases family 28 77 415 IPR000743 GO:0004650|GO:0005975
Vivi1g05413 463 SUPERFAMILY Pectin lyase-like 33 429 IPR011050 -
Vivi1g05413 463 SMART pbh1 269 290 IPR006626 -
Vivi1g05413 463 SMART pbh1 325 346 IPR006626 -
Vivi1g05413 463 SMART pbh1 296 317 IPR006626 -
Vivi1g05413 463 SMART pbh1 235 267 IPR006626 -
Vivi1g05413 463 SMART pbh1 208 234 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05413 Vivi-Chr1 118495680 118499311 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05413 6 463 Glycoside Hydrolase AT3G62110 67.949 0.0 649
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05413 - - gmx:100786985 773.467
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g05413 1 118495680 118499311 Vivi1g05413 1 118495680 118499311 ECH
Vivi6g04712 6 149931246 149934623 Vivi1g05413 1 118495680 118499311 PCT