Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04038 ATGAAGATTTCTACATATTCTTTTATTCTTTTGTGCTTCTTTCAATCCACGCGAGCAATGTTAAATCCCATTGATTTCTTAGCATTGCAATCGATTCGAAGATCGCTTCACGATGTTCCTGGCTCCAATTTCTTTTCATCTTGGGACTTCACTGATGATCCATGCAACTTCGCCGGAGTTTTCTGTGTTTCCGATAAAGTTGTTGCTCTCAATCTCGGCGAATCCAGAGCCGGTTCACCTGGTTTAACCGGGAAAATCGACACCGCCGTTGGTAAACTATCTTCTCTCGTCGACTTAACCGTTTCTCCCGGTAGAGTTTACGGTCCACTTCCTCCGTCCATTTCGAAATTGAAGAACCTCAAGTTTCTCGGCATCAGCCGGAATTTCATCTTCGGCGAGATTCCGGCTGGGCTAGGTCAGCTTCGCAATCTCAGAACAATCGATTTAAGCTACAATCAGCTCGCCGGAGCTATTCCTCCGTCAATCGGAAAGTTACCGAATCTAAACAACCTGATGCTTCGTCATAACCGTCTCACCGGTTCAATTCCATCCTTCGCTTCAGCTAAAAACCTGAACCGGCTCGATCTAAAGCACAACTCACTCACCGGTTCACTCGCTCCTGATTCTCTCCCCTCTTCCCTACAATACCTCTCTCTATCATGGAACAAGCTTACCGGAACGGTGGACCGGGTTTTATACAAACTAAACCGCCTCAACTACCTCGATCTAAGCTTCAACCGGTTCACCGGTTCAATCCCGCGTCAACTATTCTCATTCCCTCTAACCAACTTACAGTTAGAAAGAAACCAATTATACGGTCCGGTTGAACCGTTTAATGAAGTTACAATCCAAACCGTTGATCTAAGCTTCAACAAACTATCAGGTGAAATATCACCTTTGCTAGCTAGTGTGCAAAATTTGTATCTAAACAACAACGGTTTCACCGGCGAGGTTCCCGGTAGTTTTGTTGAACGGTTATTAGCGGCAAGTATTCAGATACTGTATTTGCAGCATAATTATCTTACCGGAATCGTGATAAATCCGACGGCGGAGATTCCGTTGAGCAGTTCTCTTTGTTTACAGTATAACTGTATGGTTCCTCCTATTCAGATGACGTGTCCTTCTAAAGCTGGTTACTTGAAAATTAGGCCTGCTAACCAGTGCCATTGA 1170 0.4462 MKISTYSFILLCFFQSTRAMLNPIDFLALQSIRRSLHDVPGSNFFSSWDFTDDPCNFAGVFCVSDKVVALNLGESRAGSPGLTGKIDTAVGKLSSLVDLTVSPGRVYGPLPPSISKLKNLKFLGISRNFIFGEIPAGLGQLRNLRTIDLSYNQLAGAIPPSIGKLPNLNNLMLRHNRLTGSIPSFASAKNLNRLDLKHNSLTGSLAPDSLPSSLQYLSLSWNKLTGTVDRVLYKLNRLNYLDLSFNRFTGSIPRQLFSFPLTNLQLERNQLYGPVEPFNEVTIQTVDLSFNKLSGEISPLLASVQNLYLNNNGFTGEVPGSFVERLLAASIQILYLQHNYLTGIVINPTAEIPLSSSLCLQYNCMVPPIQMTCPSKAGYLKIRPANQCH 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04038 389 Pfam Leucine rich repeat N-terminal domain 25 62 IPR013210 -
Vivi6g04038 389 Gene3D Ribonuclease Inhibitor 25 186 IPR032675 -
Vivi6g04038 389 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 12 389 - -
Vivi6g04038 389 SUPERFAMILY L domain-like 36 375 - -
Vivi6g04038 389 Gene3D Ribonuclease Inhibitor 187 376 IPR032675 -
Vivi6g04038 389 SMART LRR_typ_2 301 324 IPR003591 -
Vivi6g04038 389 SMART LRR_typ_2 235 259 IPR003591 -
Vivi6g04038 389 SMART LRR_typ_2 141 164 IPR003591 -
Vivi6g04038 389 SMART LRR_typ_2 165 189 IPR003591 -
Vivi6g04038 389 FunFam Nuclear pore complex protein NUP107 23 184 - -
Vivi6g04038 389 Pfam Leucine Rich repeat 212 226 IPR001611 GO:0005515
Vivi6g04038 389 Pfam Leucine Rich Repeat 143 165 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04038 Vivi-Chr6 137835509 137837166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04038 28 345 Receptor kinase-like Gene Family AT5G62230 32.523 1.39e-38 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04038 - - tpra:123917600 675.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g04038 6 137835509 137837166 Vivi6g04038 6 137835509 137837166 ECH
Vivi6g04038 6 137835509 137837166 Vivi1g05197 1 112798123 112799804 PCT