Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05197 ATGGCGAACCAAATGATTCCTTCATGTTTTCTTCTGTTTTTGTTCTGTTTGATGCAAACACATATTATACTTGCTATTTTGGATCCAACTGATTTTCTAGCTTTGCAATCGATTCGGAAATCTCTCGAAGACATGCCTGGTTCTGATTTCTTTTCTTCATGGGATTTCACTGCTGATCCTTGTAACTTCTCCGGCGTTTTATGTGACTCCGATAAGGTTATCGCGCTCAACCTCGGTGATCCGAGAGCCGGTGCGGCCGGTTTAACGGGACGCCTCGACGCCGCCATTGGTAAACTCTCTTCTCTAGCTGAGTTTACCGTTGTTCCGGGAAGAATATACGGTACTCTGCCTCAAACCATTTCCAATTTAAAGAGCCTCAAGTTCCTTGCTATTAACAGAAACTTCATCTCCGGCGAGATTCCGGCGGAGTTAGGTGAGTTACGCAGTCTCAAAACTATTGATCTCAGTTACAACCAGCTCACCGGAAAAATTCCTCCGACGGTCGGATCATTACCGGGACTAACGAATCTCATCCTCTGCCATAACCGTCTCTCCGGTTCTATCCCTCGGTTCGGTTCTCAGGCCTTAACCCGGTTGGACCTAAAGCACAACTCTCTTACCGGTTCACTTGGTCCAAACTCTCTCCCTCCGTCGCTTCAGTATCTCTCCTTGTCATGGAATCAACTCACCGGCTCAATGGACCGGGTTCTAACCCGGCTCGAGCAGCTAAACTATTTAGACCTGAGTCTAAACCAGTTCACAGGAACCCTTCCCGGTCGGATATTTTCATTTCCACTAAGCAATCTCCAATTACAAAGAAACCAGTTCTCCGGTTCAGTTGAACCGGTGGATCAAGTTGCAATTCCGACCGTTGATCTCAGTTTCAACCGGTTATCCGGTCAGATATCACCAATGCTAGCTAGCGTGCAGAATCTTTACCTGAACAATAACCGGTTCTCCGGTCGGGTACCGGCTAGTTTTGTGGAGCGGTTATTGGATGCGAGTATACAGATATTGTATTTGCAGCATAACTATCTAACGGGAATTGAGATTAGTCCAACGGCTGTGATTCCAGAGAGAAGCTCACTGTGTATGCAGTATAATTGCATGGTCCCGCCCGTAGAGACTCCCTGCCCTTTGAGGGCTGGAAAACAGAAAACAAGACCTACTACACAGTGCAACCAGTTTAAAGGCTGA 1197 0.4695 MANQMIPSCFLLFLFCLMQTHIILAILDPTDFLALQSIRKSLEDMPGSDFFSSWDFTADPCNFSGVLCDSDKVIALNLGDPRAGAAGLTGRLDAAIGKLSSLAEFTVVPGRIYGTLPQTISNLKSLKFLAINRNFISGEIPAELGELRSLKTIDLSYNQLTGKIPPTVGSLPGLTNLILCHNRLSGSIPRFGSQALTRLDLKHNSLTGSLGPNSLPPSLQYLSLSWNQLTGSMDRVLTRLEQLNYLDLSLNQFTGTLPGRIFSFPLSNLQLQRNQFSGSVEPVDQVAIPTVDLSFNRLSGQISPMLASVQNLYLNNNRFSGRVPASFVERLLDASIQILYLQHNYLTGIEISPTAVIPERSSLCMQYNCMVPPVETPCPLRAGKQKTRPTTQCNQFKG 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05197 398 FunFam Nuclear pore complex protein NUP107 29 190 - -
Vivi1g05197 398 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 10 395 - -
Vivi1g05197 398 Gene3D Ribonuclease Inhibitor 193 370 IPR032675 -
Vivi1g05197 398 Gene3D Ribonuclease Inhibitor 30 192 IPR032675 -
Vivi1g05197 398 SUPERFAMILY L domain-like 49 370 - -
Vivi1g05197 398 Pfam Leucine rich repeat N-terminal domain 29 69 IPR013210 -
Vivi1g05197 398 SMART LRR_typ_2 240 264 IPR003591 -
Vivi1g05197 398 SMART LRR_typ_2 217 239 IPR003591 -
Vivi1g05197 398 SMART LRR_typ_2 147 171 IPR003591 -
Vivi1g05197 398 SMART LRR_typ_2 306 329 IPR003591 -
Vivi1g05197 398 Pfam Leucine rich repeat 172 229 IPR001611 GO:0005515
Vivi1g05197 398 Pfam Leucine Rich Repeat 149 171 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05197 Vivi-Chr1 112798123 112799804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05197 88 328 Receptor kinase-like Gene Family AT5G62230 32.129 3.70e-20 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05197 - - gmx:100800224 656.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g05197 1 112798123 112799804 Vivi1g05197 1 112798123 112799804 ECH
Vivi6g04038 6 137835509 137837166 Vivi1g05197 1 112798123 112799804 PCT