Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04028 ATGGCGGCTATCCAAGAATCCCGGGCGGATCAACCGAAAACGGTGCCGGTGCCGTCTCAAATGCCGCCGCCGTTGTTAGTCTCCGACGCCTTCGCCAAGGACGCCATTCTCGCATGGTATCGCGGCGAGTTTGCGGCCGCAAACGCGATCATCGATGCACTCTGCGGTCATCTCGCGCAGGTTGCTTCGTCCTCCAACGATTACGACTTGGCGTTTGCCGCAATCCATCACAGGCGGCTCAATTGGATCCCTGTCCTCCAGATGCAGAAGTATCACTCCATTGCTGATGTCACTCTCGAACTGCGTAATGTTGCTGAGAAGAAAATCGAATCGGTTGATGGAAAAACGAAAAGCGTAGATGAGAAACCGGAAATGAATGAGGAAGCTGTGGAAAAGGTCGGAAATGACGGCGATGAAGCTCCGGCGGAGTATGATACGCTGGACAGTGAGATCACTGATTCAGGATCGCTGGAAGTGCAACACAGTTTTATGAACAATAGTATATGTTCAAATCATGAAGAATGTGAAGGACGTCCTTCAGAGATAAAGTTGACACAAGGTTTCACAACAAAGGAATTCGTGAAGGGGCATCCGGTGAATGCTGTTAAAGGATTGAGGTTGTATGAGGACGTTTTATCTGAATCACAGCTCGGCAAACTGGCTGATTTTGTGAAAGAGATCCACGCTGCTGGTCAGAATGGAGAACTTTCAGGTGAAACCTTTATACTATTTAACAAACAGGTGAAGGGGAACAAGAGGGAGCTGATTCAGTTAGGTGTACCCATATTTGGACAGATAAAAGACATTGCCAAAAGCAAAATTGAGCCAATTCCATCACTTCTTCATGGTGTCATTGATCACCTTATTCAGTGGCAATTAATTCCAGAGTACACAAGGCCAAATGGTTGCATTATCAACTTCTTTGAAGAGGGGGAGTTTTCTCAGCCATTCTTAAAACCACCACATTTGGATCAACCTCTATCTACCCTTCTTCTCTCTGAATCTACCATGGCTTTTGGGCGGATTCTTATGAGTGAAAATGATGGGAATTACAAAGGTCCACTCATGCTATCTTTGAAGCAAGGGTCTCTTTTAGTGATGAGAGGAAACAGCGCTGATATGGCAAGGCATGTGATGTGTCCATCCCCTAACAAAAGGGTGAGTATCACCTTCTTTAGAGTGAGAGAAGGCTCTTATCATGGCCAATCAACAAGCCCTCCTCTAGCGACGACATCCGCAATGACAGTTTGGCAACCTGGCACTGCCAGTCCACTTGCTTTGCCAAATGGGGCTATAAGTGGCCACCAGGCTATGGATATGATACCCAGATGGGGTATGTTTGGTCCTCCGATGGTCATGCTAACCCCTATGCACCCTATGACAATGAATCCCAACAAACTTCCTCGAGGCGGGACTGGAGTTTTCTTACCATGGAAGGGGCATCCCAGAAAACATTCAAGGTATCTTCCACCACGTGCCCATAAAGGACGGGTTATGGCATTACCTCCCCCTGTTGAATCACACAGGGAAGACTCTACTTCTGAACCAACCATTACCGTTGAAGGATAG 1569 0.4729 MAAIQESRADQPKTVPVPSQMPPPLLVSDAFAKDAILAWYRGEFAAANAIIDALCGHLAQVASSSNDYDLAFAAIHHRRLNWIPVLQMQKYHSIADVTLELRNVAEKKIESVDGKTKSVDEKPEMNEEAVEKVGNDGDEAPAEYDTLDSEITDSGSLEVQHSFMNNSICSNHEECEGRPSEIKLTQGFTTKEFVKGHPVNAVKGLRLYEDVLSESQLGKLADFVKEIHAAGQNGELSGETFILFNKQVKGNKRELIQLGVPIFGQIKDIAKSKIEPIPSLLHGVIDHLIQWQLIPEYTRPNGCIINFFEEGEFSQPFLKPPHLDQPLSTLLLSESTMAFGRILMSENDGNYKGPLMLSLKQGSLLVMRGNSADMARHVMCPSPNKRVSITFFRVREGSYHGQSTSPPLATTSAMTVWQPGTASPLALPNGAISGHQAMDMIPRWGMFGPPMVMLTPMHPMTMNPNKLPRGGTGVFLPWKGHPRKHSRYLPPRAHKGRVMALPPPVESHREDSTSEPTITVEG 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04028 522 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED 32 137 IPR044842 GO:0003729|GO:0006402|GO:0032451
Vivi6g04028 522 MobiDBLite consensus disorder prediction 114 139 - -
Vivi6g04028 522 MobiDBLite consensus disorder prediction 502 522 - -
Vivi6g04028 522 SUPERFAMILY Clavaminate synthase-like 193 394 - -
Vivi6g04028 522 Gene3D - 188 398 IPR037151 -
Vivi6g04028 522 MobiDBLite consensus disorder prediction 114 142 - -
Vivi6g04028 522 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 299 395 IPR005123 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04028 Vivi-Chr6 137646905 137651734 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04028 K10767 - gmx:100776159 778.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g04028 6 137646905 137651734 Vivi6g04028 6 137646905 137651734 ECH
Vivi6g04028 6 137646905 137651734 Vivi1g05180 1 112552998 112557753 PCT