Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03994 ATGACAAAGACCGCAACCGATCGAAGCGGAGTCCGAGTCGTCGTCGCCGGTGACCGAGGCTCCGGTAAATCAAGCCTGATAGCTGCTATAGCGTCGGACTCATTCCCCGACACCGTTCTTCCCGTGCTTCCGCCTACTCTCTTGCCCGCTGATTTTTTTCCCGACTACGTTCCCCTCACCGTAATCGATACATCCTCTAGCTTGGAGAAACAAAACAAGCGGAATGAAGAATTGAAAGGCGCTGATGTCGTGGTTTTAACATATGCTTGCAATGATTCTCAGTCCTTTTCGCGATTGAGTTCTTACTGGTTTCGGGAACTGCAGATGTTAGAGGTGACAGTACCTATAATTGTGGTTGGTTGTAAGCTCGACTTGCGAGACGAAAGCCAACAAGTGAGCTTAGAAGATCTTTTGGAACAGCTTCTAGAAGAGTTCAATAATGTTGCTACCTGCATTGAATGCTCTGCAGCAACACTATACCAGGTCCCTGAAGTTTTTTATTTTGCTCAAAAAGCTGTACTACATCCAGTAGATCCATTGTTTGATCATGAAAGTCAAGCTTTAACAGATCAGTGTGTTAGGGCGTTGAGAAGAATATTTGTTCTTTGTGATCGTGACATGGATGATGCCCTCAATGATGCAGAACTAAATGATTTTCAGGTTAGATGTTTCAATGCACCATTGCAGTCATCGGAAATAGCAGATGTCAAAACAGTTGTACAGCAGAAAGTACCGGAAGGAATCAACTCACATGGTCTTACTTTTCCAGGATTTCTGTATATACACAGTATGTTCTTAAGAAAAGGGCATCCGGAGACATTATGGGCCGTGTTAAGGAACTTTGGATATGATAATGATTTAAAACTCAAGGATGATTTCCTTCCTGTTCCAGCTAAGATTGCTCCTGATCAGAGTGTGGAGCTGACAGGTGAAGCTGTAGAGTTTCTAAATGGCATATTCCGACTATTGGATACCGATAAAGATCGAGCCCTGAGACCTGCTGAAGTGGACAAGCTATTTTGTACTGCTCCAGAAAGCCCATGGAATGATGCTCCATATAACGACGCTGCGGAGAGAACTGATATGGGTTACATGTCTCTTAACGGATTTCTATCCCAGTGGGCCTTTATGACATTACTCGATCCACCATGTAGCCTGGCAAATTTGGTTTACATTGGATATAGTGGTAATCCTGCTGCAGCACTCCGTGTTACTCGTAGGAGATCAGTTGATCGCAAGAGACAAGCAACAGAAAGGAATGTGTTCCAATGCTATGTTTTTGGTTCTAAAAATGCTGGGAAATCTGCTCTGTTGGATGCATTATTGGGAAGGCCTTTCTCAAATAATTATACTCCAACTACGGTTGAGAAGTTTGCTGCAAATGCCATTGAATTAATAGGGGGAACTAGGAAAACTCTTGTATTACGGGAGATACCTGAAAGTGAAGTATCGAAAGTTCTTTCAAATCCGGATTATTTGGCAGCATGTGATGTAGCCGTTTTTGTGTATGACAGATGA 1518 0.4321 MTKTATDRSGVRVVVAGDRGSGKSSLIAAIASDSFPDTVLPVLPPTLLPADFFPDYVPLTVIDTSSSLEKQNKRNEELKGADVVVLTYACNDSQSFSRLSSYWFRELQMLEVTVPIIVVGCKLDLRDESQQVSLEDLLEQLLEEFNNVATCIECSAATLYQVPEVFYFAQKAVLHPVDPLFDHESQALTDQCVRALRRIFVLCDRDMDDALNDAELNDFQVRCFNAPLQSSEIADVKTVVQQKVPEGINSHGLTFPGFLYIHSMFLRKGHPETLWAVLRNFGYDNDLKLKDDFLPVPAKIAPDQSVELTGEAVEFLNGIFRLLDTDKDRALRPAEVDKLFCTAPESPWNDAPYNDAAERTDMGYMSLNGFLSQWAFMTLLDPPCSLANLVYIGYSGNPAAALRVTRRRSVDRKRQATERNVFQCYVFGSKNAGKSALLDALLGRPFSNNYTPTTVEKFAANAIELIGGTRKTLVLREIPESEVSKVLSNPDYLAACDVAVFVYDR 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03994 505 PANTHER RHO FAMILY GTPASE 11 186 IPR003578 GO:0005525|GO:0007264
Vivi6g03994 505 ProSitePatterns EF-hand calcium-binding domain. 204 216 IPR018247 -
Vivi6g03994 505 Gene3D - 183 287 - -
Vivi6g03994 505 Pfam EF hand associated 227 310 IPR013567 -
Vivi6g03994 505 FunFam Mitochondrial Rho GTPase 8 178 - -
Vivi6g03994 505 SUPERFAMILY EF-hand 180 375 IPR011992 -
Vivi6g03994 505 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 208 IPR027417 -
Vivi6g03994 505 Gene3D - 289 479 - -
Vivi6g03994 505 Pfam EF hand associated 348 415 IPR013566 -
Vivi6g03994 505 FunFam Mitochondrial Rho GTPase 289 479 - -
Vivi6g03994 505 Pfam Ras family 12 173 IPR001806 GO:0003924|GO:0005525
Vivi6g03994 505 Gene3D - 1 176 IPR027417 -
Vivi6g03994 505 ProSiteProfiles Miro domain profile. 8 175 IPR020860 GO:0003924|GO:0005525
Vivi6g03994 505 SMART rab_sub_5 11 176 - -
Vivi6g03994 505 SMART rho_sub_3 13 176 IPR001806 GO:0003924|GO:0005525
Vivi6g03994 505 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 418 504 IPR027417 -
Vivi6g03994 505 ProSiteProfiles small GTPase Rab1 family profile. 5 203 - -
Vivi6g03994 505 FunFam Mitochondrial Rho GTPase 183 287 - -
Vivi6g03994 505 SMART ras_sub_4 12 176 - -
Vivi6g03994 505 PRINTS Transforming protein P21 ras signature 151 173 - -
Vivi6g03994 505 PRINTS Transforming protein P21 ras signature 11 32 - -
Vivi6g03994 505 PRINTS Transforming protein P21 ras signature 112 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03994 Vivi-Chr6 137044407 137053139 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03994 4 504 EF-hand Containing Proteins AT3G63150 60.279 0.0 640
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03994 K07870 - gmx:100803790 843.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g03994 6 137044407 137053139 Vivi1g06405 1 144616712 144625404 PCT