Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06405 ATGGCATTTCGCTACAAATCCACCACCACCACCACCACCACCATTCCCAAGGAAGTCACAATCCTCGTTATCGGCGACAAATCCACCGGAAAATCCACCCTCATTTCCGCCATGGCCTCCGATTCTTTCCCCTCCACGGTTCCTCCGCTGCTTCCACCCACTCGTTTGCCTGCTAATTCCTTCACCGATTCTGCTTCTCTCTTCGTCATTGACACACCTTCAAGTGTGGTGCAACAAGGTAAGCTAAGTGAAGAATTGAAGCGTGCGGATTCGGTGGTTGTAACCTATGCTTGTGATGATAATGTGAGTTTTGAGCGTGTGAGTTCTTACTGGTTGCCTGAATTGCAGAAGCTTGAGGTGAAGGCACCTGTGCTTGTGGTTGGTTGTAAGCTTGATCTTCGCAATGAAAGAATGCAAGTTAGCTTAGAGAGTCTCACCACAGGTATCATGAACCAGTTCAAAGAAGTTGTTACCTGTATTGAATGCTCTGCAGCTACACTTTATCAGGTTCCTGAAGTTTTTTATTTTGCACAAAAATCGGCACTTCATCCGGTGGATCCTTTGTTCGATTATGATACAAATGCTTTAACAGATCGCTGTGTAAGGGCATTAAGGAGGATTTTTAATCTTTTTGATTTCAACCTGGATGGCATCTTCACTGATCGTGATTTATACGAGTTTCAGACTAGCTCCTTCGGTGCAGAACTGCGACAGTCTGACATAGATCAAATCAAAACAATGGTAGAGCAGAATGTTCCTGAAGGAGTCAATTCTCAAGGTCTTACTTTTCGTGGCTTCGTAGAAATCCATAATATGTTTCTAAAGAAAGGGCGAACAGAGACATTCTGGGCAGTTCTAAGAAAATTTGGATATGGTAACGATTTAAAATTGCGGGATGATTTTCTTCCCGTTCCATCTAAGGCTTCTGATCAGAGTGTGGAGCTGAGCAGTGCAGCCATAGAGTTTCTGAAAGGTGTCTTTAGATTATTAGATACAGATAAGGATCAATTACTACGGCCTGCAGAAATTGATAAGCTATTTGATGCTGCTCCAGAAAGTCCGTGGAAGGATACTCCATATAAGGATGCAGCTGAGACAACTGAAATGGGTTATATATCTTTAAACGGATTTTTGTCTCAGTGGGCCCTTATGACTTTACTGGATCCAAAATATAGCTTGGCCAATTTGATTTACATCGGATGTAAACTTAAGCCTGCTGCAGCACTCCGTGTCACTCCTAGAAGATCAGAAGAACGCAAGAAGCAAAAAACAGAAAGAAATGTGTTCCAATGCTATGTTTTTGGTTCTAAAAATTCCGGAAAATCTGCTTTTTTATTTTCATTATTGGGAAGGCCTTTCTCAGCTTTCTATACTCCGACAACTGTTGAGCGGTATGCAGCAAACAACATTGAATTAATAAAGGGAACTAAGAAAACTCTCATATTGCGTGAGATTCCGGAAGATGAAGTATCAAGTTTTTTGTCAAAAAAGGATTGTCTGGCTGCATGTGATGTAGCTGCTTTTGTACATGACAGGTGTGGTGCAAAATGA 1551 0.4191 MAFRYKSTTTTTTTIPKEVTILVIGDKSTGKSTLISAMASDSFPSTVPPLLPPTRLPANSFTDSASLFVIDTPSSVVQQGKLSEELKRADSVVVTYACDDNVSFERVSSYWLPELQKLEVKAPVLVVGCKLDLRNERMQVSLESLTTGIMNQFKEVVTCIECSAATLYQVPEVFYFAQKSALHPVDPLFDYDTNALTDRCVRALRRIFNLFDFNLDGIFTDRDLYEFQTSSFGAELRQSDIDQIKTMVEQNVPEGVNSQGLTFRGFVEIHNMFLKKGRTETFWAVLRKFGYGNDLKLRDDFLPVPSKASDQSVELSSAAIEFLKGVFRLLDTDKDQLLRPAEIDKLFDAAPESPWKDTPYKDAAETTEMGYISLNGFLSQWALMTLLDPKYSLANLIYIGCKLKPAAALRVTPRRSEERKKQKTERNVFQCYVFGSKNSGKSAFLFSLLGRPFSAFYTPTTVERYAANNIELIKGTKKTLILREIPEDEVSSFLSKKDCLAACDVAAFVHDRCGAK 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06405 516 SUPERFAMILY EF-hand 179 385 IPR011992 -
Vivi1g06405 516 FunFam Mitochondrial Rho GTPase 191 295 - -
Vivi1g06405 516 ProSiteProfiles EF-hand calcium-binding domain profile. 318 353 IPR002048 GO:0005509
Vivi1g06405 516 Pfam EF hand associated 235 318 IPR013567 -
Vivi1g06405 516 PANTHER RHO FAMILY GTPASE 19 183 IPR003578 GO:0005525|GO:0007264
Vivi1g06405 516 PRINTS Transforming protein P21 ras signature 120 133 - -
Vivi1g06405 516 PRINTS Transforming protein P21 ras signature 159 181 - -
Vivi1g06405 516 PRINTS Transforming protein P21 ras signature 19 40 - -
Vivi1g06405 516 Gene3D - 191 295 - -
Vivi1g06405 516 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 425 511 IPR027417 -
Vivi1g06405 516 SMART rab_sub_5 19 184 - -
Vivi1g06405 516 Pfam EF hand associated 355 422 IPR013566 -
Vivi1g06405 516 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 208 IPR027417 -
Vivi1g06405 516 Gene3D - 297 486 - -
Vivi1g06405 516 SMART rho_sub_3 21 184 IPR001806 GO:0003924|GO:0005525
Vivi1g06405 516 Pfam Ras family 21 180 IPR001806 GO:0003924|GO:0005525
Vivi1g06405 516 ProSiteProfiles Miro domain profile. 16 183 IPR020860 GO:0003924|GO:0005525
Vivi1g06405 516 Gene3D - 16 186 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06405 Vivi-Chr1 144616712 144625404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06405 1 511 EF-hand Containing Proteins AT3G63150 54.492 0.0 566
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06405 K07870 - gmx:100806983 722.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g06405 1 144616712 144625404 Vivi1g06405 1 144616712 144625404 ECH
Vivi6g03994 6 137044407 137053139 Vivi1g06405 1 144616712 144625404 PCT